Detail information of Os10g0160000_circ_g.6


General Information
CircRNA Name Os10g0160000_circ_g.6
ID in PlantcircBase osa_circ_006259
Alias NA
Organism Oryza sativa
Position chr10: 3836042-3837328  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os10g0160000
Parent gene annotation Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15
) (Ubiquitin thiolesterase 12) (Ubiquitin-specific processing pr
otease 12) (Deubiquitinating enzyme 12). (Os10t0160000-01);Simil
ar to Ubiquitin carboxyl-terminal hydrolase. (Os10t0160000-02)
Parent gene strand -
Alternative splicing Os10g0160000_circ_g.1 Os10g0160000_circ_g.2 Os10g0160000_circ_g.3 Os10g0160000_circ_g.4 Os10g0160000_circ_g.5 Os10g0160000_circ_g.7 Os10g0160000_circ_g.8
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AT
Number of exons covered Os10t0160000-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAATGGAAGTTACAAAACAGAACAAAGGTGCAAAACTCAGTGTCAGCACCATTTAACAGACAT
TTATAAGAAGTGTTTAGGAGAAACATTCGGAGCAACaagtaacagatcaatcttctttaacaaa
atgtgaacaatctaaattgccaaattttgtcaaataaatatagcttatccaaacaagaactaaa
cgacaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGTAACAGATCAATCTTCTTTAACAAAATGTGAACAATCTAAATTGCCAAATTTTGTCAAATA
AATATAGCTTATCCAAACAAGAACTAAACGACAAGATGAGGGAGGCACTAATATATCAAAAAGC
ATAATAAACAATCCCTTATTCCGAAAGACACATTTATTAAAGGTTGCAACAGGTAATATTACAC
AATGAAAAAAAAATGTATGGAGAAATACATCAAGTTCTGAAAACAAGCAAAGCAGGGATGCATA
AGTAGTGATAAATAGGATGCATCAGTTCACAAAATGACAACAAACTGTATACAAGACGATGACG
GTTATAAAAGAGAAGATTACAGCAAGGAAGATAACAGGGACGCAATTAAAACAGATTCTAAAGA
TGGAAAACATATTCAGGAAAAGAGCTGAAAACTTGTGTCAATGTGTGGCCAAAAAGGATGCACC
ATTTATCAGAACAGCGAACAAGCCAAAAAGCAGAGACAATTTATCTCTTTGACAGGACATGTTG
ATTTATGCTACAAGTCGTTGACTTTTTTTCTAGTCAAACTTCTTTAAGTTTGACCAAGTTTATA
TAAAAATTTAGTAACATCTACAACACCAAATTAGTTTCATTAAAACTAACATTTAATATATTTT
GATAATATGTTTGTTTTATGTTGAAAATGTGTCTACATTTTTCTATAAACTTGGTCTAACTTAA
AAAAGTTTGACTAGGAAAAAAGTCAAAACGACTTATAACAAAAGTTTGAGAAACATAGATATAA
TCATAGTTTGACACAATTTAAATAAACAACCAACACTATGGTTAAAAAACAAATTTCACAAAAC
CTCAGGTTTGGAACGATTGTAACGCAAAATCCCAGCTTTTATAATTTGTTTCGAAGAACCCCAA
ATTTTTGGCCACACTCTTATACCACTATTTATGCATAACACTTGTACAATAAAATAGTATGCGG
TATTGTTTTTAGTACATGTAAGAATTAGACCTGGGAGTTTTATTACCCAAAACCTAGGGTTTTG
TAATAAAATCTCACAAGAAATTAATGCATATGTACTTCGGAACTGAAATGTGCCTTAACACTAA
CAGTGCACCGGTGTGTTGAAATGAAAATTAACTTCATAGTTCTGGGACACAACAGCATGTTATC
TTAAAGTAAGAAATACGTTTATAATGTACGACTAATTAATGGAAGTTACAAAACAGAACAAAGG
TGCAAAACTCAGTGTCAGCACCATTTAACAGACATTTATAAGAAGTGTTTAGGAGAAACATTCG
GAGCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.334245416
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017