Detail information of AT2G05830_circ_g.8


General Information
CircRNA Name AT2G05830_circ_g.8
ID in PlantcircBase ath_circ_012926
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2230283-2230906  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G05830
Parent gene annotation Methylthioribose-1-phosphate isomerase
Parent gene strand +
Alternative splicing AT2G05830_circ_g.1 AT2G05830_circ_g.2 AT2G05830_circ_g.3 AT2G05830_circ_g.4 AT2G05830_circ_g.5 AT2G05830_circ_g.6 AT2G05830_circ_g.7 AT2G05830_circ_g.9 AT2G05830_circ_g.10
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05830.3:3
AT2G05830.4:3
AT2G05830.2:3
AT2G05830.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACCGCCGGATATGGTACTGCCCTCGGTGTCATCCGTGCACTCCATACTCAAGGAATCTTAGAA
AGAGCATACTGCACAGAAACTCGTCCATTTAATCAAccgtccaacagcagttaatcttgcagat
gctgctttgaaacttaaacatgttatagcaaaggccttggctactgccaccgaagccaaatcca
ttttcaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 349
Transcript exons: 2230283-2230382,2230468-2230610,2230801-2230906
CCGTCCAACAGCAGTTAATCTTGCAGATGCTGCTTTGAAACTTAAACATGTTATAGCAAAGGCC
TTGGCTACTGCCACCGAAGCCAAATCCATTTTCAAGGCATATATTGAAGCTAGTGAGGATATGC
TTGAAGATGATGTTGTTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACA
AGCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAGCCTTGCTACCGCC
GGATATGGTACTGCCCTCGGTGTCATCCGTGCACTCCATACTCAAGGAATCTTAGAAAGAGCAT
ACTGCACAGAAACTCGTCCATTTAATCAA

Genomic sequence CCGTCCAACAGCAGTTAATCTTGCAGATGCTGCTTTGAAACTTAAACATGTTATAGCAAAGGCC
TTGGCTACTGCCACCGAAGCCAAATCCATTTTCAAGGTATCAAGAAGTTTCGTAATTCATCTGT
GTGTGTGCCTTTTGCTTTTGTAAGTTTAGCTCATTCTCTGTGCTTGTTGTTCTTCAGGCATATA
TTGAAGCTAGTGAGGATATGCTTGAAGATGATGTTGTTTCAAACAAAGCTATAGGAAACTTTGG
TTTAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAAC
ACTGGCAGGTATTGATTTAGCTAGATTTTCTGAATTGCATAGATACCGTCTGCATAAGTTACTC
AAGTTGAGTAATAGCATGTTACCACATATGTGTATGCAGCTTCAACCAATAGAGTTGTGTAATG
GTTTTTGGTGTTATGTTTATGTGGTAGATTCCTAGTAAGGCATTAACTACGAGTTCTATTGACT
TTGTAGCCTTGCTACCGCCGGATATGGTACTGCCCTCGGTGTCATCCGTGCACTCCATACTCAA
GGAATCTTAGAAAGAGCATACTGCACAGAAACTCGTCCATTTAATCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.247368801
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017