Detail information of Os01g0512100_circ_g.5


General Information
CircRNA Name Os01g0512100_circ_g.5
ID in PlantcircBase osa_circ_001906
Alias NA
Organism Oryza sativa
Position chr1: 18044475-18047583  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0512100
Parent gene annotation Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE T
O GRAVITY) (AtARG1) (AtJ15) (AtDjB15). (Os01t0512100-01)
Parent gene strand +
Alternative splicing Os01g0512100_circ_g.1 Os01g0512100_circ_g.2 Os01g0512100_circ_g.3 Os01g0512100_circ_g.4 Os01g0512100_circ_g.6 Os01g0512100_circ_g.7
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0512100-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACTTCCAGGAAGATAGTCAGAAGACTGGTAAGGTGACATCTGCAGGCATGTATTTCTTGCAT
TTTCAAGTGTATCGTATGGATTCAACAGTGAATGCGgttgacaagcaaagtgctcatttttatg
gtgtaacaataagtgaagaacaagctcagtcaggcattgtagtcagagtcacctcagccgcaca
aagtaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGACAAGCAAAGTGCTCATTTTTATGGTGTAACAATAAGTGAAGAACAAGCTCAGTCAGGCA
TTGTAGTCAGAGTCACCTCAGCCGCACAAAGTAAATTTAAGGTATGAGGTTGATTCTTCCTTCA
ATTGCTCTGGAATTGAAGCTTTTATGTTCTGCATCTCTTTGAATTTCAGGATATTATTTAATTC
TCTCATTTGCCAAATATTTCTCTATAGCTGCTTTTCTTTGAACAAGAAATTAATGGAGGTTATG
GACTAGCTCTTCAGGTACTTTCGAGCCTTCGCCTTTATATAATTGCATGATTGATGTGTTCTGT
AGTTTTTCTCATTATTTGTCAATGGAATGCCATGCGGCCATGGATTAGTATTACTTTCTCTGTT
CATAAATACCTGGCGTTTTACACTCGGCATATTAAACAACGTGACATTTTGCATTTTGGTGGAT
AATGAGGTTCTCTGTTGCACCCTTAGCCTCCATGAATAAATCAAGCATCTTGGCCACCTTAATG
AAAAGAAAATGCACCCTTATCTTTCCATAAATGAATCAAGCATCTTGCCCTAAAAAAGGCAAGC
ATCTTAGCCACCCATATAAAAACCGTTTATCTATATGAGTTTTTATATGGGTGGCTAAGATCCT
TTTATTTTTTACAGCAAGATGTAAATGCCTCCCTTGCAACTACAAATACCTCCCTCGAATGAAG
GAGATTCACAGCGATTGTAAATGATTTCTCCATGGCTGTAATCGTAACATAGATAAAATGACAC
CACATAATTGTAAATGAAGTAGTCCGCAGCCATAAATACTATCAGAATTGTAATATAGCTCCAT
GGCACTTTTTAGGGGTAAATTTTGATTACACTTTGAGCTAAAAGGTTCTACCATTACAATCCCA
TTAGTATTTCATTATAATCAAGCAAATTCTATTTACATCCATGTTCATGAGACCTTACAGTCAA
TGGTACTTGTTTACGACCACAAGAAAAATAATGCGTGTACATGTAGATCCATTACATTCTGTGT
TATCAACCCAAACCAACAACAAAAAGAAAGAAGGCCCTAGTGGTGACGCAACGGCAGTAACTGC
CTTGTGTTCTCTAATGGGAGGTTGAGGTGATAGGAGAGGAGGCTGCAAGGACCAGCATGCAAGG
ACTCTCTGTCAGGGAAGGAAGGCAGTGAAACCAACAGTGTGACAAGGTTTGGTGGTGGTGGCTT
GAGCTTGTCGAGCACAGTAGGCTGCCTTCATCACCATTCTGGTGGATAAGTGGGATGCCATTGA
TGGATCTGGTTGAAGGAGTTTTGGATGCGGTGGCATCGAGTGCTGGAGGACAGGGGTGCTGTCG
ATATATCCGGCTAGAGGAGACAAGGCCGCCTGTAGAGCGCTGGAGGTTTCCGCTATTGTCAGAT
CTATTCCAACTCCTGAGGTTGCCACTGCTGGGCTGGGGGAGCAATGGTGTGTCATTGTCTCATT
GATGGATCCATCTGGTGGAGGAGAGGAGGTGCCATGTTGAGCGTTGGAGGCCACTGCCATCGTC
ACCATTGGTGTTGAAGTGGGAGTGGTTGGGATGCTGTCAGCTGGAGTAGGATTGAGAGGCGGTT
GTTGAGGAGGGAGGAAGAGGAGTGGGTAGTTAGGGTTTTGGACCGTTTGTACTCTGTTTATACC
TGCTTATGGTCGAAGCAGTTTATTACAGCCAAGATTGACCCATTTACTATTGTGGGCTACCACT
TATGAGTAATGCGAGTGGTAGGGGTGGGAGCTCTCCAAGAGTCCATGGCGTAGACTAGAAGTAT
ATAAAAATTTATCATTTATGTAAAATGTGATATTTCTGGACTTCTCCAATTTTAATTTTGATAC
CAATTGTGCAGTAAGTGACCAATGCATGCTGTACATAACTGTCTGCCAAATGGATAAGAGCCAA
TGTTTTTCTAGCTGTCTCCAAGTTTGCATCTGTGTCTCTAGTTCTGCCATTGACTTCTTTATTG
CCTCTAATCACAAAAGAGTGTCGTTTTAGGATGCACACAGTCAACACAAATTAATTTTGACCGT
AATTATTATTTGGAACGTAAGTTTTTAGGCATAAGGACATTATGTAGCCAAGTTTGTGACAACA
AGAACATTAATATTGTACTTGTCTAAGTTCTTATTTTGGTTCATGCAATAAACTAAGTGATCAA
ACTTATGTCTTTTGAGTGTGAAAAGTAAAAAACAACTCACCTTTTGTGGCTGGAGGGAGTAGTA
TGAATGGTCAACAATGATTTTTTTTTTGTTAACCAGCTATGAACATGATCTTAATATTTTACAT
TAATCTGCAGTTTTTTTCTTTTTTCATTTTGGGTATGTTAATGTGCTGCATATAAAAAAAATTA
GAAGCCTAGCTTAATAATGCATTTGGTAAACCTGGGCACCATTACATTGTAAGTTATTTCTATG
GCGCCATGCTTAATCGTTGTTGAATGGCGGATAGATTTGCTAAACGTGGCTTGCCACACCCAGC
AGCTTGCCGTCTTTGTGATCAAGACGATGAGATTATCCAACACCTGCTGGTTTCTTGCATGGTC
GCCCGGCAAATATGGATTGAAGTGCTCGGGTCTACATGCTATGATACCCAACCAGATTCGGTTA
GGTTTTCGAGTTAGTAGTACCGAGCAAGCAAGTTCACAAACTGAAACGAAAAGGCTCAACTCTT
TGATTATTGTAATAGCCTGGGAGATATGGACATATTGCAGTGAAATGATGTAGCCAGGGATGTT
GTATTAGTAGTGCGTTTGGTGGAAATGGAGGGCACCCTTTGGTGTGGTATTGGAGCAAAGGAGC
TTGAGAGCTTGTTGTTTGCATTGCTACTAGTGTTGGTTGTGTATTTTCTTTATGTGGCTCTTAT
GTGTCAAACGTTGTAAGGGGTTGGATACTTGGATCTGTTTGTTCTTTATTTTTCTTCTTCTTTA
AATGATTAAATGATACGCAGCTCTCTTGCATATTCAAGAAAAATAATAACCTCCAGTTTTTTTC
CGCACTTCCAGGAAGATAGTCAGAAGACTGGTAAGGTGACATCTGCAGGCATGTATTTCTTGCA
TTTTCAAGTGTATCGTATGGATTCAACAGTGAATGCG
Conservation Information
Conserved circRNAs osi_circ_009631
PMCS 0.205460408
Functional Information
Coding potential Y
Potential coding position 18047534-18047580(+)
Potential amino acid sequence MYFLHFQVYRMDSTVNAVDKQSAHFYGVTISEEQAQSGIVVRVTSAAQSKFKLLFFEQEINGGY
GLALQEDSQKTGKVTSAGMYFLHFQVYRMDSTVNAVDKQSAHFYGVTISEEQAQSGIVVRVTSA
AQSKFKLLFFEQEINGGYGLALQEDSQKTGKVTSAGMYFLHFQVYRMDSTVNAVDKQSAHFYGV
TISEEQAQSGIVVRVTSAAQSKFKLLFFEQEINGGYGLALQEDSQKTGKVTSAGMYFLHFQVYR
MDSTVNA(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017