Plant Circular RNA Database

Detail information of Os01g0512100_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os01g0512100_circ_g.5
					
						ID in PlantcircBase
						osa_circ_001906
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 18044475-18047583  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0512100						
					
						Parent gene annotation
						
							Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE T
O GRAVITY) (AtARG1) (AtJ15) (AtDjB15). (Os01t0512100-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os01g0512100_circ_g.1 Os01g0512100_circ_g.2 Os01g0512100_circ_g.3 Os01g0512100_circ_g.4 Os01g0512100_circ_g.6 Os01g0512100_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0512100-01:3

General Information
CircRNA Name	Os01g0512100_circ_g.5
ID in PlantcircBase	osa_circ_001906
Alias	NA
Organism	Oryza sativa
Position	chr1: 18044475-18047583 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0512100
Parent gene annotation	Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE T O GRAVITY) (AtARG1) (AtJ15) (AtDjB15). (Os01t0512100-01)
Parent gene strand	+
Alternative splicing	Os01g0512100_circ_g.1 Os01g0512100_circ_g.2 Os01g0512100_circ_g.3 Os01g0512100_circ_g.4 Os01g0512100_circ_g.6 Os01g0512100_circ_g.7
Support reads	1
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0512100-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCACTTCCAGGAAGATAGTCAGAAGACTGGTAAGGTGACATCTGCAGGCATGTATTTCTTGCAT
TTTCAAGTGTATCGTATGGATTCAACAGTGAATGCGgttgacaagcaaagtgctcatttttatg
gtgtaacaataagtgaagaacaagctcagtcaggcattgtagtcagagtcacctcagccgcaca
aagtaaat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTTGACAAGCAAAGTGCTCATTTTTATGGTGTAACAATAAGTGAAGAACAAGCTCAGTCAGGCA
TTGTAGTCAGAGTCACCTCAGCCGCACAAAGTAAATTTAAGGTATGAGGTTGATTCTTCCTTCA
ATTGCTCTGGAATTGAAGCTTTTATGTTCTGCATCTCTTTGAATTTCAGGATATTATTTAATTC
TCTCATTTGCCAAATATTTCTCTATAGCTGCTTTTCTTTGAACAAGAAATTAATGGAGGTTATG
GACTAGCTCTTCAGGTACTTTCGAGCCTTCGCCTTTATATAATTGCATGATTGATGTGTTCTGT
AGTTTTTCTCATTATTTGTCAATGGAATGCCATGCGGCCATGGATTAGTATTACTTTCTCTGTT
CATAAATACCTGGCGTTTTACACTCGGCATATTAAACAACGTGACATTTTGCATTTTGGTGGAT
AATGAGGTTCTCTGTTGCACCCTTAGCCTCCATGAATAAATCAAGCATCTTGGCCACCTTAATG
AAAAGAAAATGCACCCTTATCTTTCCATAAATGAATCAAGCATCTTGCCCTAAAAAAGGCAAGC
ATCTTAGCCACCCATATAAAAACCGTTTATCTATATGAGTTTTTATATGGGTGGCTAAGATCCT
TTTATTTTTTACAGCAAGATGTAAATGCCTCCCTTGCAACTACAAATACCTCCCTCGAATGAAG
GAGATTCACAGCGATTGTAAATGATTTCTCCATGGCTGTAATCGTAACATAGATAAAATGACAC
CACATAATTGTAAATGAAGTAGTCCGCAGCCATAAATACTATCAGAATTGTAATATAGCTCCAT
GGCACTTTTTAGGGGTAAATTTTGATTACACTTTGAGCTAAAAGGTTCTACCATTACAATCCCA
TTAGTATTTCATTATAATCAAGCAAATTCTATTTACATCCATGTTCATGAGACCTTACAGTCAA
TGGTACTTGTTTACGACCACAAGAAAAATAATGCGTGTACATGTAGATCCATTACATTCTGTGT
TATCAACCCAAACCAACAACAAAAAGAAAGAAGGCCCTAGTGGTGACGCAACGGCAGTAACTGC
CTTGTGTTCTCTAATGGGAGGTTGAGGTGATAGGAGAGGAGGCTGCAAGGACCAGCATGCAAGG
ACTCTCTGTCAGGGAAGGAAGGCAGTGAAACCAACAGTGTGACAAGGTTTGGTGGTGGTGGCTT
GAGCTTGTCGAGCACAGTAGGCTGCCTTCATCACCATTCTGGTGGATAAGTGGGATGCCATTGA
TGGATCTGGTTGAAGGAGTTTTGGATGCGGTGGCATCGAGTGCTGGAGGACAGGGGTGCTGTCG
ATATATCCGGCTAGAGGAGACAAGGCCGCCTGTAGAGCGCTGGAGGTTTCCGCTATTGTCAGAT
CTATTCCAACTCCTGAGGTTGCCACTGCTGGGCTGGGGGAGCAATGGTGTGTCATTGTCTCATT
GATGGATCCATCTGGTGGAGGAGAGGAGGTGCCATGTTGAGCGTTGGAGGCCACTGCCATCGTC
ACCATTGGTGTTGAAGTGGGAGTGGTTGGGATGCTGTCAGCTGGAGTAGGATTGAGAGGCGGTT
GTTGAGGAGGGAGGAAGAGGAGTGGGTAGTTAGGGTTTTGGACCGTTTGTACTCTGTTTATACC
TGCTTATGGTCGAAGCAGTTTATTACAGCCAAGATTGACCCATTTACTATTGTGGGCTACCACT
TATGAGTAATGCGAGTGGTAGGGGTGGGAGCTCTCCAAGAGTCCATGGCGTAGACTAGAAGTAT
ATAAAAATTTATCATTTATGTAAAATGTGATATTTCTGGACTTCTCCAATTTTAATTTTGATAC
CAATTGTGCAGTAAGTGACCAATGCATGCTGTACATAACTGTCTGCCAAATGGATAAGAGCCAA
TGTTTTTCTAGCTGTCTCCAAGTTTGCATCTGTGTCTCTAGTTCTGCCATTGACTTCTTTATTG
CCTCTAATCACAAAAGAGTGTCGTTTTAGGATGCACACAGTCAACACAAATTAATTTTGACCGT
AATTATTATTTGGAACGTAAGTTTTTAGGCATAAGGACATTATGTAGCCAAGTTTGTGACAACA
AGAACATTAATATTGTACTTGTCTAAGTTCTTATTTTGGTTCATGCAATAAACTAAGTGATCAA
ACTTATGTCTTTTGAGTGTGAAAAGTAAAAAACAACTCACCTTTTGTGGCTGGAGGGAGTAGTA
TGAATGGTCAACAATGATTTTTTTTTTGTTAACCAGCTATGAACATGATCTTAATATTTTACAT
TAATCTGCAGTTTTTTTCTTTTTTCATTTTGGGTATGTTAATGTGCTGCATATAAAAAAAATTA
GAAGCCTAGCTTAATAATGCATTTGGTAAACCTGGGCACCATTACATTGTAAGTTATTTCTATG
GCGCCATGCTTAATCGTTGTTGAATGGCGGATAGATTTGCTAAACGTGGCTTGCCACACCCAGC
AGCTTGCCGTCTTTGTGATCAAGACGATGAGATTATCCAACACCTGCTGGTTTCTTGCATGGTC
GCCCGGCAAATATGGATTGAAGTGCTCGGGTCTACATGCTATGATACCCAACCAGATTCGGTTA
GGTTTTCGAGTTAGTAGTACCGAGCAAGCAAGTTCACAAACTGAAACGAAAAGGCTCAACTCTT
TGATTATTGTAATAGCCTGGGAGATATGGACATATTGCAGTGAAATGATGTAGCCAGGGATGTT
GTATTAGTAGTGCGTTTGGTGGAAATGGAGGGCACCCTTTGGTGTGGTATTGGAGCAAAGGAGC
TTGAGAGCTTGTTGTTTGCATTGCTACTAGTGTTGGTTGTGTATTTTCTTTATGTGGCTCTTAT
GTGTCAAACGTTGTAAGGGGTTGGATACTTGGATCTGTTTGTTCTTTATTTTTCTTCTTCTTTA
AATGATTAAATGATACGCAGCTCTCTTGCATATTCAAGAAAAATAATAACCTCCAGTTTTTTTC
CGCACTTCCAGGAAGATAGTCAGAAGACTGGTAAGGTGACATCTGCAGGCATGTATTTCTTGCA
TTTTCAAGTGTATCGTATGGATTCAACAGTGAATGCG
						
					

			
		

Sequences
Splice junction sequence	GCACTTCCAGGAAGATAGTCAGAAGACTGGTAAGGTGACATCTGCAGGCATGTATTTCTTGCAT TTTCAAGTGTATCGTATGGATTCAACAGTGAATGCGgttgacaagcaaagtgctcatttttatg gtgtaacaataagtgaagaacaagctcagtcaggcattgtagtcagagtcacctcagccgcaca aagtaaat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTTGACAAGCAAAGTGCTCATTTTTATGGTGTAACAATAAGTGAAGAACAAGCTCAGTCAGGCA TTGTAGTCAGAGTCACCTCAGCCGCACAAAGTAAATTTAAGGTATGAGGTTGATTCTTCCTTCA ATTGCTCTGGAATTGAAGCTTTTATGTTCTGCATCTCTTTGAATTTCAGGATATTATTTAATTC TCTCATTTGCCAAATATTTCTCTATAGCTGCTTTTCTTTGAACAAGAAATTAATGGAGGTTATG GACTAGCTCTTCAGGTACTTTCGAGCCTTCGCCTTTATATAATTGCATGATTGATGTGTTCTGT AGTTTTTCTCATTATTTGTCAATGGAATGCCATGCGGCCATGGATTAGTATTACTTTCTCTGTT CATAAATACCTGGCGTTTTACACTCGGCATATTAAACAACGTGACATTTTGCATTTTGGTGGAT AATGAGGTTCTCTGTTGCACCCTTAGCCTCCATGAATAAATCAAGCATCTTGGCCACCTTAATG AAAAGAAAATGCACCCTTATCTTTCCATAAATGAATCAAGCATCTTGCCCTAAAAAAGGCAAGC ATCTTAGCCACCCATATAAAAACCGTTTATCTATATGAGTTTTTATATGGGTGGCTAAGATCCT TTTATTTTTTACAGCAAGATGTAAATGCCTCCCTTGCAACTACAAATACCTCCCTCGAATGAAG GAGATTCACAGCGATTGTAAATGATTTCTCCATGGCTGTAATCGTAACATAGATAAAATGACAC CACATAATTGTAAATGAAGTAGTCCGCAGCCATAAATACTATCAGAATTGTAATATAGCTCCAT GGCACTTTTTAGGGGTAAATTTTGATTACACTTTGAGCTAAAAGGTTCTACCATTACAATCCCA TTAGTATTTCATTATAATCAAGCAAATTCTATTTACATCCATGTTCATGAGACCTTACAGTCAA TGGTACTTGTTTACGACCACAAGAAAAATAATGCGTGTACATGTAGATCCATTACATTCTGTGT TATCAACCCAAACCAACAACAAAAAGAAAGAAGGCCCTAGTGGTGACGCAACGGCAGTAACTGC CTTGTGTTCTCTAATGGGAGGTTGAGGTGATAGGAGAGGAGGCTGCAAGGACCAGCATGCAAGG ACTCTCTGTCAGGGAAGGAAGGCAGTGAAACCAACAGTGTGACAAGGTTTGGTGGTGGTGGCTT GAGCTTGTCGAGCACAGTAGGCTGCCTTCATCACCATTCTGGTGGATAAGTGGGATGCCATTGA TGGATCTGGTTGAAGGAGTTTTGGATGCGGTGGCATCGAGTGCTGGAGGACAGGGGTGCTGTCG ATATATCCGGCTAGAGGAGACAAGGCCGCCTGTAGAGCGCTGGAGGTTTCCGCTATTGTCAGAT CTATTCCAACTCCTGAGGTTGCCACTGCTGGGCTGGGGGAGCAATGGTGTGTCATTGTCTCATT GATGGATCCATCTGGTGGAGGAGAGGAGGTGCCATGTTGAGCGTTGGAGGCCACTGCCATCGTC ACCATTGGTGTTGAAGTGGGAGTGGTTGGGATGCTGTCAGCTGGAGTAGGATTGAGAGGCGGTT GTTGAGGAGGGAGGAAGAGGAGTGGGTAGTTAGGGTTTTGGACCGTTTGTACTCTGTTTATACC TGCTTATGGTCGAAGCAGTTTATTACAGCCAAGATTGACCCATTTACTATTGTGGGCTACCACT TATGAGTAATGCGAGTGGTAGGGGTGGGAGCTCTCCAAGAGTCCATGGCGTAGACTAGAAGTAT ATAAAAATTTATCATTTATGTAAAATGTGATATTTCTGGACTTCTCCAATTTTAATTTTGATAC CAATTGTGCAGTAAGTGACCAATGCATGCTGTACATAACTGTCTGCCAAATGGATAAGAGCCAA TGTTTTTCTAGCTGTCTCCAAGTTTGCATCTGTGTCTCTAGTTCTGCCATTGACTTCTTTATTG CCTCTAATCACAAAAGAGTGTCGTTTTAGGATGCACACAGTCAACACAAATTAATTTTGACCGT AATTATTATTTGGAACGTAAGTTTTTAGGCATAAGGACATTATGTAGCCAAGTTTGTGACAACA AGAACATTAATATTGTACTTGTCTAAGTTCTTATTTTGGTTCATGCAATAAACTAAGTGATCAA ACTTATGTCTTTTGAGTGTGAAAAGTAAAAAACAACTCACCTTTTGTGGCTGGAGGGAGTAGTA TGAATGGTCAACAATGATTTTTTTTTTGTTAACCAGCTATGAACATGATCTTAATATTTTACAT TAATCTGCAGTTTTTTTCTTTTTTCATTTTGGGTATGTTAATGTGCTGCATATAAAAAAAATTA GAAGCCTAGCTTAATAATGCATTTGGTAAACCTGGGCACCATTACATTGTAAGTTATTTCTATG GCGCCATGCTTAATCGTTGTTGAATGGCGGATAGATTTGCTAAACGTGGCTTGCCACACCCAGC AGCTTGCCGTCTTTGTGATCAAGACGATGAGATTATCCAACACCTGCTGGTTTCTTGCATGGTC GCCCGGCAAATATGGATTGAAGTGCTCGGGTCTACATGCTATGATACCCAACCAGATTCGGTTA GGTTTTCGAGTTAGTAGTACCGAGCAAGCAAGTTCACAAACTGAAACGAAAAGGCTCAACTCTT TGATTATTGTAATAGCCTGGGAGATATGGACATATTGCAGTGAAATGATGTAGCCAGGGATGTT GTATTAGTAGTGCGTTTGGTGGAAATGGAGGGCACCCTTTGGTGTGGTATTGGAGCAAAGGAGC TTGAGAGCTTGTTGTTTGCATTGCTACTAGTGTTGGTTGTGTATTTTCTTTATGTGGCTCTTAT GTGTCAAACGTTGTAAGGGGTTGGATACTTGGATCTGTTTGTTCTTTATTTTTCTTCTTCTTTA AATGATTAAATGATACGCAGCTCTCTTGCATATTCAAGAAAAATAATAACCTCCAGTTTTTTTC CGCACTTCCAGGAAGATAGTCAGAAGACTGGTAAGGTGACATCTGCAGGCATGTATTTCTTGCA TTTTCAAGTGTATCGTATGGATTCAACAGTGAATGCG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_009631 						
					
						PMCS
						0.205460408

Conservation Information
Conserved circRNAs	osi_circ_009631
PMCS	0.205460408

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							18047534-18047580(+)
						
						Potential amino acid sequence
						
							MYFLHFQVYRMDSTVNAVDKQSAHFYGVTISEEQAQSGIVVRVTSAAQSKFKLLFFEQEINGGY
GLALQEDSQKTGKVTSAGMYFLHFQVYRMDSTVNAVDKQSAHFYGVTISEEQAQSGIVVRVTSA
AQSKFKLLFFEQEINGGYGLALQEDSQKTGKVTSAGMYFLHFQVYRMDSTVNAVDKQSAHFYGV
TISEEQAQSGIVVRVTSAAQSKFKLLFFEQEINGGYGLALQEDSQKTGKVTSAGMYFLHFQVYR
MDSTVNA(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	18047534-18047580(+)
Potential amino acid sequence	MYFLHFQVYRMDSTVNAVDKQSAHFYGVTISEEQAQSGIVVRVTSAAQSKFKLLFFEQEINGGY GLALQEDSQKTGKVTSAGMYFLHFQVYRMDSTVNAVDKQSAHFYGVTISEEQAQSGIVVRVTSA AQSKFKLLFFEQEINGGYGLALQEDSQKTGKVTSAGMYFLHFQVYRMDSTVNAVDKQSAHFYGV TISEEQAQSGIVVRVTSAAQSKFKLLFFEQEINGGYGLALQEDSQKTGKVTSAGMYFLHFQVYR MDSTVNA(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0512100_circ_g.5

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