Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os07g0484300_circ_g.3 |
ID in PlantcircBase | osa_circ_033825 |
Alias | Os07circ08292/Os_ciR652 |
Organism | Oryza sativa |
Position | chr7: 17748328-17750730 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl, find_circ |
Parent gene | Os07g0484300 |
Parent gene annotation |
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07 t0484300-01);Similar to protein binding protein. (Os07t0484300-0 2) |
Parent gene strand | - |
Alternative splicing | Os07g0484300_circ_g.1 Os07g0484300_circ_g.2 Os07g0484300_circ_g.4 Os07g0484300_circ_g.5 Os07g0484300_circ_g.6 Os07g0484300_circ_g.7 |
Support reads | 9/38/8 |
Tissues | leaf and panicle/root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os07t0484300-02:5 Os07t0484300-01:6 |
Conservation Information | |
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Conserved circRNAs | osi_circ_007183* osi_circ_017071 |
PMCS | 0.394039693 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17750677-17748330(-) |
Potential amino acid sequence |
MFFEPLSIGFETLQSIMVHGFQLFDIWQRHQMDSGVDYLDFQKTYKQAAGSFSEWRGRLVRNFG FVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFWKRIKTYAKLRKALSSLDGA LPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLRSWLDQGLMDGYSCPTCRRPLFLS SQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHEHPIEHQNPADAVWRIKLCVGFCKSCNSQLF WLMFFEPLSIGFETLQSIMVHGFQLFDIWQRHQMDSGVDYLDFQKTYKQAAGSFSEWRGRLVRN FGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFWKRIKTYAKLRKALSSLD GALPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLRSWLDQGLMDGYSCPTCRRPLF LSSQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHEHPIEHQNPADAVWRIKLCVGFCKSCNSQ LFWLMFFEPLSIGFETLQSIMVHGFQLFDIWQRHQMDSGVDYLDFQKTYKQAAGSFSEWRGRLV RNFGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFWKRIKTYAKLRKALSS LDGALPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLRSWLDQGLMDGYSCPTCRRP LFLSSQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHEHPIEHQNPADAVWRIKLCVGFCKSCN SQLFWLMFFEPLSIGFETLQSIMVHGFQLFDIWQRHQMDSGVDYLDFQKTYKQAAGSFSEWRGR LVRNFGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFWKRIKTYAKLRKAL SSLDGALPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLRSWLDQGLMDGYSCPTCR RPLFLSSQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHEHPIEHQNPADAVW(-) |
Sponge-miRNAs | osa-miR1861a |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015;Chu et al., 2017 |