Detail information of Os07g0484300_circ_g.3


General Information
CircRNA Name Os07g0484300_circ_g.3
ID in PlantcircBase osa_circ_033825
Alias Os07circ08292/Os_ciR652
Organism Oryza sativa
Position chr7: 17748328-17750730  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene Os07g0484300
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07
t0484300-01);Similar to protein binding protein. (Os07t0484300-0
2)
Parent gene strand -
Alternative splicing Os07g0484300_circ_g.1 Os07g0484300_circ_g.2 Os07g0484300_circ_g.4 Os07g0484300_circ_g.5 Os07g0484300_circ_g.6 Os07g0484300_circ_g.7
Support reads 9/38/8
Tissues leaf and panicle/root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0484300-02:5
Os07t0484300-01:6
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: GACGATGAGTGTGCCATCTG
R: AGATGAAACGCCATACCACG
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACCTGCAGTGTCTCAAAGCCAATACTAAGTGGCTCAAAAAACATAAGCCAAAATAGTTGAGAA
TTACACGACTTGCAGAACCCAACACAAAGCTTTATCctccaaacagcatctgcaggattctgat
gttcaataggatgttcatgaccaggaaccctctgctgattcaaccccgcattaagttgttctgc
aattaact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 192
Transcript exons: 17748328-17748431,17750643-17750730
CTCCAAACAGCATCTGCAGGATTCTGATGTTCAATAGGATGTTCATGACCAGGAACCCTCTGCT
GATTCAACCCCGCATTAAGTTGTTCTGCAATTAACTGGACCTCAAAGCCAATACTAAGTGGCTC
AAAAAACATAAGCCAAAATAGTTGAGAATTACACGACTTGCAGAACCCAACACAAAGCTTTATC

Transcript length: 774
Transcript exons: 17748328-17748534,17749217-17749284,17749370-17749507,17
749596-17749753,17750308-17750413,17750634-17750730
CTCCAAACAGCATCTGCAGGATTCTGATGTTCAATAGGATGTTCATGACCAGGAACCCTCTGCT
GATTCAACCCCGCATTAAGTTGTTCTGCAATTAACTGGACGTTTCCTACCTCTGCTGTAGATCT
TGTGTGACCTTGAGATGACAGAAAGAGAGGTCTTCGACAAGTTGGACATGAGTAACCATCCATT
AATCCTTGGTCCAACCATGATCGCAAGCAAGCTAGATGAAATAGATGGTTGCAGGATAACTTTT
TAGCTCGAGCCATTGGTCCCCTACAGATGGCACACTCATCGTCGTATGCACAGATTTCATCATA
TGTAGCATCTGGAAGTGCTCCGTCGAGTGAACTAAGTGCCTTTCGTAACTTGGCATAAGTTTTT
ATCCGCTTCCAAAATGAAGCTATAAGAGCGCGCAAGTTCAATAGGAGAACAGCGTCAACCAGAT
GAAACGCCATACCACGGAGCCAGAAGATCATTGAGTAATGACCAAGTGACATCAATAAGCTTAT
CAAGTCAATGACAAAACCAAAATTTCTGACTAGTCTGCCTCTCCACTCAGAAAAAGATCCTGCT
GCTTGCTTATAAGTTTTTTGGAAATCAAGATAGTCCACACCACTGTCCATTTGATGTCGTTGCC
ATATGTCAAACAACTGAAATCCATGCACCATGATTGACTGCAGTGTCTCAAAGCCAATACTAAG
TGGCTCAAAAAACATAAGCCAAAATAGTTGAGAATTACACGACTTGCAGAACCCAACACAAAGC
TTTATC

Genomic sequence CTCCAAACAGCATCTGCAGGATTCTGATGTTCAATAGGATGTTCATGACCAGGAACCCTCTGCT
GATTCAACCCCGCATTAAGTTGTTCTGCAATTAACTGGACGTTTCCTACCTCTGCTGTAGATCT
TGTGTGACCTTGAGATGACAGAAAGAGAGGTCTTCGACAAGTTGGACATGAGTAACCATCCATT
AATCCTTGGTCCAACCTACACATAGCAACAATACTTAAGGGAAAAATCAAACATAGAATGCAAT
TTGATGTGGTCACATTTGATGGTAAGATGTGAAGCTATACACAATTGCTAAGCATATCTACTTT
TGTGGGTGTAGAAGTGTTGCATATTTTTGTACTAAGTGAGAAGCAGAGGTCAGTACAGTTGTAC
GAAAGAGCAACAAAGGGAGCTGAACAACAGTCTAAGCTGAAATACAAGTAATACTATGATCTGT
TACTAATGACTAACAACTGCAACTTCTTCACATCAGCTTGCTGGCAAGCTTCAATCTCGTCAAA
GATATTTGTGAGAATCTGACTAATAATTTGCTAAGAAGGTTAACAGAAGGACCATCCACCATGC
TCAGCAATATCAATTTTCCTTATGCAGAGATTCCATGACAGAAAAATTTAAGTCAACCGTAAAA
TAGGAATGTTGGTCCCGTATTTTAATAAGTAAATTTGGAATGCATAAGATCAAATGGACAGTTA
TGACGGCATATGGAGTCTGTTCATAACTACAGCCTGCAGTCCTTATGCAAATAGTGGGAGCACA
ATTTCCAGAAAATGAAAATGAATCTACTTAAAGTTTTTTTTTTGGTAGGACATTATGAGCTATA
ATAAAATTGAACCACAGACCATCAATTGCAAAATAGTAAAAGGAACTCATCGCGTACCATGATC
GCAAGCAAGCTAGATGAAATAGATGGTTGCAGGATAACTTTTTAGCTCGAGCCATTGGTCCCTA
GGAGTTGCAGATTTCAAAAGAAAATCAGATACACAAGCACTCAAAACACTACAGATCCTGTGAA
AATCTAGAAATTGTTTACCCTACAGATGGCACACTCATCGTCGTATGCACAGATTTCATCATAT
GTAGCATCTGGAAGTGCTCCGTCGAGTGAACTAAGTGCCTTTCGTAACTTGGCATAAGTTTTTA
TCCGCTTCCAAAATGAAGCTATAAGAGCCTGCAAACATTTTCAAAGAATTCCAGTCAGTACATC
ATACATATTTATTTAAAGTTTATCGAAGTTAACAAGTGAATGTCACACTCACGCGCAAGTTCAA
TAGGAGAACAGCGTCAACCAGATGAAACGCCATACCACGGAGCCAGAAGATCATTGAGTAATGA
CCAAGTGACATCAATAAGCTTATCAAGTCAATGACAAAACCAAAATTTCTGACTAGTCTGCCTC
TCCACTCAGAAAAAGATCCTGCAGTTACAAAGCATGATTGGACCCTGGTGGTAAAGTTGAGATA
ATTCAAGAGACGCATGTACAAGAAATGAGACATGGACTGCTCAACCTGAACTAAATTAATGTTC
CAACAGATCATAGAGCAAAATTTACAGTATTACAAACAGACCAGACCAACATAACAAATGTCAG
ATGAGTGAATGAAACCTCTGTTATATACTCCGGCCTGTCAGGAAAAAAAAAAGGTTCTGTTTTT
TACCATTGGCATGGCCTTGGAAAAAAAAGATCAGCAATTTATATAAAACCGATTATTGAGATCA
ATATACATGTTTTTTCTTTGTGACCAATCTAAATATTCATAGATATGTTACCAGTGAAAGATAA
AATAGTTTACTGTATGCGTTCTAGGATTTTTTTTTTCATTCACTGAATCTGGTGTTTGCATTCT
TGTCTAGGTTAGTAATAACCGGTTAACCACGAAACTCATACAGCATTATCCTGCATGCTCAGCC
CTAGAGGGTTTACTAAACTGAATTAAATGAGTCTCTGAGCAGCGAAGACACGCTTATCACCTGC
TGCTTGCTTATAAGTTTTTTGGAAATCAAGATAGTCCACACCACTGTCCATTTGATGTCGTTGC
CATATGTCAAACAACTGAAATCCATGCACCATGATTGACTGCTAGGAAAATACTATGTGAGAAA
AGGTTGAAGATATTCAGAAGTAATAACTGCATGCAGGTAAATGCTCATAATATTTTTAACATCT
CTAGTTGGCATTTATAAGCACCACCTCCTTTGAACATTAAATGCAATGCAGATTTCTTTGATAA
TGCAAGATCGTTATAAATTAAGAAAAGATAAGGAGGAGAAACTTCCCACAATCTGGGTTGAAGT
ACCTGCAGTGTCTCAAAGCCAATACTAAGTGGCTCAAAAAACATAAGCCAAAATAGTTGAGAAT
TACACGACTTGCAGAACCCAACACAAAGCTTTATC
Conservation Information
Conserved circRNAs osi_circ_007183* osi_circ_017071
PMCS 0.394039693
Functional Information
Coding potential Y
Potential coding position 17750677-17748330(-)
Potential amino acid sequence MFFEPLSIGFETLQSIMVHGFQLFDIWQRHQMDSGVDYLDFQKTYKQAAGSFSEWRGRLVRNFG
FVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFWKRIKTYAKLRKALSSLDGA
LPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLRSWLDQGLMDGYSCPTCRRPLFLS
SQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHEHPIEHQNPADAVWRIKLCVGFCKSCNSQLF
WLMFFEPLSIGFETLQSIMVHGFQLFDIWQRHQMDSGVDYLDFQKTYKQAAGSFSEWRGRLVRN
FGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFWKRIKTYAKLRKALSSLD
GALPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLRSWLDQGLMDGYSCPTCRRPLF
LSSQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHEHPIEHQNPADAVWRIKLCVGFCKSCNSQ
LFWLMFFEPLSIGFETLQSIMVHGFQLFDIWQRHQMDSGVDYLDFQKTYKQAAGSFSEWRGRLV
RNFGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFWKRIKTYAKLRKALSS
LDGALPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLRSWLDQGLMDGYSCPTCRRP
LFLSSQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHEHPIEHQNPADAVWRIKLCVGFCKSCN
SQLFWLMFFEPLSIGFETLQSIMVHGFQLFDIWQRHQMDSGVDYLDFQKTYKQAAGSFSEWRGR
LVRNFGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFWKRIKTYAKLRKAL
SSLDGALPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLRSWLDQGLMDGYSCPTCR
RPLFLSSQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHEHPIEHQNPADAVW(-)
Sponge-miRNAs osa-miR1861a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA