Plant Circular RNA Database

Detail information of Os07g0484300_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os07g0484300_circ_g.2
					
						ID in PlantcircBase
						osa_circ_033824
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 17748328-17749753  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0484300						
					
						Parent gene annotation
						
							Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07
t0484300-01);Similar to protein binding protein. (Os07t0484300-0
2)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0484300_circ_g.1 Os07g0484300_circ_g.3 Os07g0484300_circ_g.4 Os07g0484300_circ_g.5 Os07g0484300_circ_g.6 Os07g0484300_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0484300-02:4
Os07t0484300-01:4

General Information
CircRNA Name	Os07g0484300_circ_g.2
ID in PlantcircBase	osa_circ_033824
Alias	NA
Organism	Oryza sativa
Position	chr7: 17748328-17749753 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0484300
Parent gene annotation	Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07 t0484300-01);Similar to protein binding protein. (Os07t0484300-0 2)
Parent gene strand	-
Alternative splicing	Os07g0484300_circ_g.1 Os07g0484300_circ_g.3 Os07g0484300_circ_g.4 Os07g0484300_circ_g.5 Os07g0484300_circ_g.6 Os07g0484300_circ_g.7
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0484300-02:4 Os07t0484300-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGATCATTGAGTAATGACCAAGTGACATCAATAAGCTTATCAAGTCAATGACAAAACCAAAAT
TTCTGACTAGTCTGCCTCTCCACTCAGAAAAAGATCctccaaacagcatctgcaggattctgat
gttcaataggatgttcatgaccaggaaccctctgctgattcaaccccgcattaagttgttctgc
aattaact

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 571
Transcript exons: 17748328-17748534,17749217-17749284,17749370-17749507,17
749596-17749753
CTCCAAACAGCATCTGCAGGATTCTGATGTTCAATAGGATGTTCATGACCAGGAACCCTCTGCT
GATTCAACCCCGCATTAAGTTGTTCTGCAATTAACTGGACGTTTCCTACCTCTGCTGTAGATCT
TGTGTGACCTTGAGATGACAGAAAGAGAGGTCTTCGACAAGTTGGACATGAGTAACCATCCATT
AATCCTTGGTCCAACCATGATCGCAAGCAAGCTAGATGAAATAGATGGTTGCAGGATAACTTTT
TAGCTCGAGCCATTGGTCCCCTACAGATGGCACACTCATCGTCGTATGCACAGATTTCATCATA
TGTAGCATCTGGAAGTGCTCCGTCGAGTGAACTAAGTGCCTTTCGTAACTTGGCATAAGTTTTT
ATCCGCTTCCAAAATGAAGCTATAAGAGCGCGCAAGTTCAATAGGAGAACAGCGTCAACCAGAT
GAAACGCCATACCACGGAGCCAGAAGATCATTGAGTAATGACCAAGTGACATCAATAAGCTTAT
CAAGTCAATGACAAAACCAAAATTTCTGACTAGTCTGCCTCTCCACTCAGAAAAAGATC
						
					

						Genomic sequence
						
							CTCCAAACAGCATCTGCAGGATTCTGATGTTCAATAGGATGTTCATGACCAGGAACCCTCTGCT
GATTCAACCCCGCATTAAGTTGTTCTGCAATTAACTGGACGTTTCCTACCTCTGCTGTAGATCT
TGTGTGACCTTGAGATGACAGAAAGAGAGGTCTTCGACAAGTTGGACATGAGTAACCATCCATT
AATCCTTGGTCCAACCTACACATAGCAACAATACTTAAGGGAAAAATCAAACATAGAATGCAAT
TTGATGTGGTCACATTTGATGGTAAGATGTGAAGCTATACACAATTGCTAAGCATATCTACTTT
TGTGGGTGTAGAAGTGTTGCATATTTTTGTACTAAGTGAGAAGCAGAGGTCAGTACAGTTGTAC
GAAAGAGCAACAAAGGGAGCTGAACAACAGTCTAAGCTGAAATACAAGTAATACTATGATCTGT
TACTAATGACTAACAACTGCAACTTCTTCACATCAGCTTGCTGGCAAGCTTCAATCTCGTCAAA
GATATTTGTGAGAATCTGACTAATAATTTGCTAAGAAGGTTAACAGAAGGACCATCCACCATGC
TCAGCAATATCAATTTTCCTTATGCAGAGATTCCATGACAGAAAAATTTAAGTCAACCGTAAAA
TAGGAATGTTGGTCCCGTATTTTAATAAGTAAATTTGGAATGCATAAGATCAAATGGACAGTTA
TGACGGCATATGGAGTCTGTTCATAACTACAGCCTGCAGTCCTTATGCAAATAGTGGGAGCACA
ATTTCCAGAAAATGAAAATGAATCTACTTAAAGTTTTTTTTTTGGTAGGACATTATGAGCTATA
ATAAAATTGAACCACAGACCATCAATTGCAAAATAGTAAAAGGAACTCATCGCGTACCATGATC
GCAAGCAAGCTAGATGAAATAGATGGTTGCAGGATAACTTTTTAGCTCGAGCCATTGGTCCCTA
GGAGTTGCAGATTTCAAAAGAAAATCAGATACACAAGCACTCAAAACACTACAGATCCTGTGAA
AATCTAGAAATTGTTTACCCTACAGATGGCACACTCATCGTCGTATGCACAGATTTCATCATAT
GTAGCATCTGGAAGTGCTCCGTCGAGTGAACTAAGTGCCTTTCGTAACTTGGCATAAGTTTTTA
TCCGCTTCCAAAATGAAGCTATAAGAGCCTGCAAACATTTTCAAAGAATTCCAGTCAGTACATC
ATACATATTTATTTAAAGTTTATCGAAGTTAACAAGTGAATGTCACACTCACGCGCAAGTTCAA
TAGGAGAACAGCGTCAACCAGATGAAACGCCATACCACGGAGCCAGAAGATCATTGAGTAATGA
CCAAGTGACATCAATAAGCTTATCAAGTCAATGACAAAACCAAAATTTCTGACTAGTCTGCCTC
TCCACTCAGAAAAAGATC
						
					

			
		

Sequences
Splice junction sequence	AAGATCATTGAGTAATGACCAAGTGACATCAATAAGCTTATCAAGTCAATGACAAAACCAAAAT TTCTGACTAGTCTGCCTCTCCACTCAGAAAAAGATCctccaaacagcatctgcaggattctgat gttcaataggatgttcatgaccaggaaccctctgctgattcaaccccgcattaagttgttctgc aattaact
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 571 Transcript exons: 17748328-17748534,17749217-17749284,17749370-17749507,17 749596-17749753 CTCCAAACAGCATCTGCAGGATTCTGATGTTCAATAGGATGTTCATGACCAGGAACCCTCTGCT GATTCAACCCCGCATTAAGTTGTTCTGCAATTAACTGGACGTTTCCTACCTCTGCTGTAGATCT TGTGTGACCTTGAGATGACAGAAAGAGAGGTCTTCGACAAGTTGGACATGAGTAACCATCCATT AATCCTTGGTCCAACCATGATCGCAAGCAAGCTAGATGAAATAGATGGTTGCAGGATAACTTTT TAGCTCGAGCCATTGGTCCCCTACAGATGGCACACTCATCGTCGTATGCACAGATTTCATCATA TGTAGCATCTGGAAGTGCTCCGTCGAGTGAACTAAGTGCCTTTCGTAACTTGGCATAAGTTTTT ATCCGCTTCCAAAATGAAGCTATAAGAGCGCGCAAGTTCAATAGGAGAACAGCGTCAACCAGAT GAAACGCCATACCACGGAGCCAGAAGATCATTGAGTAATGACCAAGTGACATCAATAAGCTTAT CAAGTCAATGACAAAACCAAAATTTCTGACTAGTCTGCCTCTCCACTCAGAAAAAGATC
Genomic sequence	CTCCAAACAGCATCTGCAGGATTCTGATGTTCAATAGGATGTTCATGACCAGGAACCCTCTGCT GATTCAACCCCGCATTAAGTTGTTCTGCAATTAACTGGACGTTTCCTACCTCTGCTGTAGATCT TGTGTGACCTTGAGATGACAGAAAGAGAGGTCTTCGACAAGTTGGACATGAGTAACCATCCATT AATCCTTGGTCCAACCTACACATAGCAACAATACTTAAGGGAAAAATCAAACATAGAATGCAAT TTGATGTGGTCACATTTGATGGTAAGATGTGAAGCTATACACAATTGCTAAGCATATCTACTTT TGTGGGTGTAGAAGTGTTGCATATTTTTGTACTAAGTGAGAAGCAGAGGTCAGTACAGTTGTAC GAAAGAGCAACAAAGGGAGCTGAACAACAGTCTAAGCTGAAATACAAGTAATACTATGATCTGT TACTAATGACTAACAACTGCAACTTCTTCACATCAGCTTGCTGGCAAGCTTCAATCTCGTCAAA GATATTTGTGAGAATCTGACTAATAATTTGCTAAGAAGGTTAACAGAAGGACCATCCACCATGC TCAGCAATATCAATTTTCCTTATGCAGAGATTCCATGACAGAAAAATTTAAGTCAACCGTAAAA TAGGAATGTTGGTCCCGTATTTTAATAAGTAAATTTGGAATGCATAAGATCAAATGGACAGTTA TGACGGCATATGGAGTCTGTTCATAACTACAGCCTGCAGTCCTTATGCAAATAGTGGGAGCACA ATTTCCAGAAAATGAAAATGAATCTACTTAAAGTTTTTTTTTTGGTAGGACATTATGAGCTATA ATAAAATTGAACCACAGACCATCAATTGCAAAATAGTAAAAGGAACTCATCGCGTACCATGATC GCAAGCAAGCTAGATGAAATAGATGGTTGCAGGATAACTTTTTAGCTCGAGCCATTGGTCCCTA GGAGTTGCAGATTTCAAAAGAAAATCAGATACACAAGCACTCAAAACACTACAGATCCTGTGAA AATCTAGAAATTGTTTACCCTACAGATGGCACACTCATCGTCGTATGCACAGATTTCATCATAT GTAGCATCTGGAAGTGCTCCGTCGAGTGAACTAAGTGCCTTTCGTAACTTGGCATAAGTTTTTA TCCGCTTCCAAAATGAAGCTATAAGAGCCTGCAAACATTTTCAAAGAATTCCAGTCAGTACATC ATACATATTTATTTAAAGTTTATCGAAGTTAACAAGTGAATGTCACACTCACGCGCAAGTTCAA TAGGAGAACAGCGTCAACCAGATGAAACGCCATACCACGGAGCCAGAAGATCATTGAGTAATGA CCAAGTGACATCAATAAGCTTATCAAGTCAATGACAAAACCAAAATTTCTGACTAGTCTGCCTC TCCACTCAGAAAAAGATC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007182* 						
					
						PMCS
						0.28130419

Conservation Information
Conserved circRNAs	osi_circ_007182*
PMCS	0.28130419

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							17749703-17748422(+)
17748375-17749743(-)
17749684-17749743(-)
						
						Potential amino acid sequence
						
							MTKPKFLTSLPLHSEKDPPNSICRILMFNRMFMTRNPLLIQPRIKLFCN*(+)
MNILLNIRILQMLFGGSFSEWRGRLVRNFGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLL
LNLRALIASFWKRIKTYAKLRKALSSLDGALPDATYDEICAYDDECAICRGPMARAKKLSCNHL
FHLACLRSWLDQGLMDGYSCPTCRRPLFLSSQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHE
HPIEHQNPADAVWRIFF*(-)
MSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFWKRIKTYAKLRKALSSLDGALPDATYDEI
CAYDDECAICRGPMARAKKLSCNHLFHLACLRSWLDQGLMDGYSCPTCRRPLFLSSQGHTRSTA
EVGNVQLIAEQLNAGLNQQRVPGHEHPIEHQNPADAVWRIFF*(-)
						
						Sponge-miRNAs
						
							osa-miR1861a 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	17749703-17748422(+) 17748375-17749743(-) 17749684-17749743(-)
Potential amino acid sequence	MTKPKFLTSLPLHSEKDPPNSICRILMFNRMFMTRNPLLIQPRIKLFCN(+) MNILLNIRILQMLFGGSFSEWRGRLVRNFGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLL LNLRALIASFWKRIKTYAKLRKALSSLDGALPDATYDEICAYDDECAICRGPMARAKKLSCNHL FHLACLRSWLDQGLMDGYSCPTCRRPLFLSSQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHE HPIEHQNPADAVWRIFF(-) MSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFWKRIKTYAKLRKALSSLDGALPDATYDEI CAYDDECAICRGPMARAKKLSCNHLFHLACLRSWLDQGLMDGYSCPTCRRPLFLSSQGHTRSTA EVGNVQLIAEQLNAGLNQQRVPGHEHPIEHQNPADAVWRIFF*(-)
Sponge-miRNAs	osa-miR1861a
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0484300_circ_g.2

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