Detail information of BGIOSGA002654_circ_g.4


General Information
CircRNA Name BGIOSGA002654_circ_g.4
ID in PlantcircBase osi_circ_008946
Alias Chr01:997054_997666(MH63RS2), Chr01:997054_997666(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1098813-1099425  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA002654
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA002654_circ_g.2 BGIOSGA002654_circ_g.3 BGIOSGA002654_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA002654-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGTG
AGAGATCCATTCTTGACTCCATTTGACAAGAAGGATgagacgaggaagagctggtcgagtccaa
ccaggggagtgttaccatctatatccacaatgtgtgtatgaagcatttgctgactatcagttgc
cagaactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGACGAGGAAGAGCTGGTCGAGTCCAACCAGGGGAGTGTTACCATCTATATCCACAATGTGTG
TATGAAGCATTTGCTGACTATCAGTTGCCAGAACTCCTGAGAACTCCTCTGCAATCCCTCTGTT
TGCAAATAAAAAGCTTGCGCCTTGGGAGCATCTCTGAATTTTTATCCAGAGCTTTGCAATCACC
TGAGTCTCTATCGGTACTTGATTTCCGTATTAATCACAAGCCGCAAAAGTCTATCCTGTGTCTT
GGAATGACTTGATAAATTAATTTGAATTTTTTCAGGTAGAAAATGCCATTGAATATCTCAAAGT
CATTGGAGCGTTTGATCGTAATGAAGAGTTAACAATTCTAGGTATCAGATCCATCCTTCAAATC
ATCCGTTTATCACTGCTTTATTGAATCATCTTGAGCATTTGTAGCATGTGCTAACTATACCCAC
GGATTGGCATTACCAGGAAAGCACTTATCCATGCTTCCAGTTGAGCCTAAATTGGGGAAGATGC
TGATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGT
GAGAGATCCATTCTTGACTCCATTTGACAAGAAGGAT
Conservation Information
Conserved circRNAs osa_circ_000143
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021