Detail information of Os06g0499900_circ_g.1


General Information
CircRNA Name Os06g0499900_circ_g.1
ID in PlantcircBase osa_circ_030969
Alias Os_ciR10388
Organism Oryza sativa
Position chr6: 17598774-17599744  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os06g0499900
Parent gene annotation Similar to Dihydrolipoamide acetyltransferase (E2) subunit of PD
C (Fragment). (Os06t0499900-01)
Parent gene strand -
Alternative splicing Os06g0499900_circ_g.2 Os06g0499900_circ_g.3 Os06g0499900_circ_g.4 Os06g0499900_circ_g.5 Os06g0499900_circ_g.6
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0499900-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACAGTAAGGTTGAACCTTTTAAACATTCTCTCATACCTCTGAGGATATTGCTGATATAGTCTT
TTGATCTGCATTTCTTATAATAGGAGTCATCAGGCCctcctacttgaccatcaaatacacgatg
gtcagcggacaatgtcaagctcatttttgtaaccactgtagccttctcggttcctgaacaagtg
gacatatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCTACTTGACCATCAAATACACGATGGTCAGCGGACAATGTCAAGCTCATTTTTGTAACCAC
TGTAGCCTTCTCGGTTCCTGAACAAGTGGACATATCAATATGAGTTAAAATACAAAAGCATTTG
TTTTTTAGAAGGAATTACACATGGTCAAGGAAATGTACCATCACTGTCCACCACAGGCTCGATA
ATCTTATTACCACGCCCAACAGCAAGAATTCCAGACTGAGAAAAATGACGGTAACAATTATCAG
CACAGATTCAAGGATCCCATTTCATCGAAGGATAGGAGGTAGGAACCTGAGGAGGATTGATGAT
TGCACAGAAGTGGTCGACTGGGTACATTCCCAAATTTGAGATGCTGCAGAAGCAATGTCAAAAC
ATTCAAATATCAACAGCAGTACAGGATTTCCCAAAAGCAATGACAAAAGGGTAAAATATCACAT
GCCTGAAAGTCCCTCCCTGAAATTCATTAGGAGCAAGCTTCCCAGCACGTGCCTTTTCAGCCAA
CTGCTTAACCTACAGTGATAGGGAAAGGAAAACTGATTATATCTCATAACCATAAACATGAAGA
CTACTTTAAAGGTCGAAAATCAGGAATATATGATAACTGATAGCGAGATGCAACTATCTACTTA
TAGTCCTGCCTTTCATATACAAAGACTTTTGTCTTCCACTAGACAAAACCCAGGTCTTTCCAGA
AATGGTTCTCAACTTTCCAAAGAAAGTCCCAGCAGTCAGGTATCTATGAAAACTGTTGACCACA
GATTTTACATTTCTAAATCATTCCAAGACCATGTCTTAAGATAGTTGATTACAAGCGTTACATG
TGCCTGTGACATTTCATGCTAAAGAACTTCTGAAACTATGACAGTAAGGTTGAACCTTTTAAAC
ATTCTCTCATACCTCTGAGGATATTGCTGATATAGTCTTTTGATCTGCATTTCTTATAATAGGA
GTCATCAGGCC
Conservation Information
Conserved circRNAs NA
PMCS 0.124395778
Functional Information
Coding potential Y
Potential coding position 17599740-17599292(-)
Potential amino acid sequence MTPIIRNADQKTISAISSEVKQLAEKARAGKLAPNEFQGGTFSISNLGMYPVDHFCAIINPPQS
GILAVGRGNKIIEPVVDSDGTEKATVVTKMSLTLSADHRVFDGQVGGPDDSYYKKCRSKDYISN
ILRG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015