Detail information of Os06g0499900_circ_g.2


General Information
CircRNA Name Os06g0499900_circ_g.2
ID in PlantcircBase osa_circ_030970
Alias NA
Organism Oryza sativa
Position chr6: 17598940-17599744  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0499900
Parent gene annotation Similar to Dihydrolipoamide acetyltransferase (E2) subunit of PD
C (Fragment). (Os06t0499900-01)
Parent gene strand -
Alternative splicing Os06g0499900_circ_g.1 Os06g0499900_circ_g.3 Os06g0499900_circ_g.4 Os06g0499900_circ_g.5 Os06g0499900_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0499900-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACAGTAAGGTTGAACCTTTTAAACATTCTCTCATACCTCTGAGGATATTGCTGATATAGTCTT
TTGATCTGCATTTCTTATAATAGGAGTCATCAGGCCcatcactgtccaccacaggctcgataat
cttattaccacgcccaacagcaagaattccagactgagaaaaatgacggtaacaattatcagca
cagattca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCACTGTCCACCACAGGCTCGATAATCTTATTACCACGCCCAACAGCAAGAATTCCAGACTG
AGAAAAATGACGGTAACAATTATCAGCACAGATTCAAGGATCCCATTTCATCGAAGGATAGGAG
GTAGGAACCTGAGGAGGATTGATGATTGCACAGAAGTGGTCGACTGGGTACATTCCCAAATTTG
AGATGCTGCAGAAGCAATGTCAAAACATTCAAATATCAACAGCAGTACAGGATTTCCCAAAAGC
AATGACAAAAGGGTAAAATATCACATGCCTGAAAGTCCCTCCCTGAAATTCATTAGGAGCAAGC
TTCCCAGCACGTGCCTTTTCAGCCAACTGCTTAACCTACAGTGATAGGGAAAGGAAAACTGATT
ATATCTCATAACCATAAACATGAAGACTACTTTAAAGGTCGAAAATCAGGAATATATGATAACT
GATAGCGAGATGCAACTATCTACTTATAGTCCTGCCTTTCATATACAAAGACTTTTGTCTTCCA
CTAGACAAAACCCAGGTCTTTCCAGAAATGGTTCTCAACTTTCCAAAGAAAGTCCCAGCAGTCA
GGTATCTATGAAAACTGTTGACCACAGATTTTACATTTCTAAATCATTCCAAGACCATGTCTTA
AGATAGTTGATTACAAGCGTTACATGTGCCTGTGACATTTCATGCTAAAGAACTTCTGAAACTA
TGACAGTAAGGTTGAACCTTTTAAACATTCTCTCATACCTCTGAGGATATTGCTGATATAGTCT
TTTGATCTGCATTTCTTATAATAGGAGTCATCAGGCC
Conservation Information
Conserved circRNAs NA
PMCS 0.129370269
Functional Information
Coding potential Y
Potential coding position 17599740-17599292(-)
17599721-17599292(-)
Potential amino acid sequence MTPIIRNADQKTISAISSEVKQLAEKARAGKLAPNEFQGGTFSISNLGMYPVDHFCAIINPPQS
GILAVGRGNKIIEPVVDSDGPDDSYYKKCRSKDYISNILRG*(-)
MQIKRLYQQYPQRLSSWLKRHVLGSLLLMNFREGLSASQIWECTQSTTSVQSSILLSLEFLLLG
VVIRLSSLWWTVMGLMTPIIRNADQKTISAISSEVKQLAEKARAGKLAPNEFQGGTFSISNLGM
YPVDHFCAIINPPQSGILAVGRGNKIIEPVVDSDGPDDSYYKKCRSKDYISNILRG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017