Detail information of Os06g0499900_circ_g.5


General Information
CircRNA Name Os06g0499900_circ_g.5
ID in PlantcircBase osa_circ_030973
Alias NA
Organism Oryza sativa
Position chr6: 17600470-17600575  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os06g0499900
Parent gene annotation Similar to Dihydrolipoamide acetyltransferase (E2) subunit of PD
C (Fragment). (Os06t0499900-01)
Parent gene strand -
Alternative splicing Os06g0499900_circ_g.1 Os06g0499900_circ_g.2 Os06g0499900_circ_g.3 Os06g0499900_circ_g.4 Os06g0499900_circ_g.6
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CA-GC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGTAACACAACCACCAAGTTTCACATTTGCATGAATTCAGATAAGAATTACaagaagggtaa
caaggatttgcacctgatatgcttgctattacaatcaaagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGAAGGGTAACAAGGATTTGCACCTGATATGCTTGCTATTACAATCAAAGATATAGTAACACA
ACCACCAAGTTTCACATTTGCATGAATTCAGATAAGAATTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.100628931
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017