Detail information of Os06g0499900_circ_g.4


General Information
CircRNA Name Os06g0499900_circ_g.4
ID in PlantcircBase osa_circ_030972
Alias NA
Organism Oryza sativa
Position chr6: 17599224-17599899  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os06g0499900
Parent gene annotation Similar to Dihydrolipoamide acetyltransferase (E2) subunit of PD
C (Fragment). (Os06t0499900-01)
Parent gene strand -
Alternative splicing Os06g0499900_circ_g.1 Os06g0499900_circ_g.2 Os06g0499900_circ_g.3 Os06g0499900_circ_g.5 Os06g0499900_circ_g.6
Support reads 2
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-GC
Number of exons covered Os06t0499900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGTACTTTTCAATTTCAATACCTTCTCTGTAGCAACTGCGATAGATATATCAACTGAAACAC
ACTTCTGGGCTTGTTCCTTGTCATTGTTCCAGTATGctgaaagtccctccctgaaattcattag
gagcaagcttcccagcacgtgccttttcagccaactgcttaacctacagtgatagggaaaggaa
aactgatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAAGTCCCTCCCTGAAATTCATTAGGAGCAAGCTTCCCAGCACGTGCCTTTTCAGCCAACT
GCTTAACCTACAGTGATAGGGAAAGGAAAACTGATTATATCTCATAACCATAAACATGAAGACT
ACTTTAAAGGTCGAAAATCAGGAATATATGATAACTGATAGCGAGATGCAACTATCTACTTATA
GTCCTGCCTTTCATATACAAAGACTTTTGTCTTCCACTAGACAAAACCCAGGTCTTTCCAGAAA
TGGTTCTCAACTTTCCAAAGAAAGTCCCAGCAGTCAGGTATCTATGAAAACTGTTGACCACAGA
TTTTACATTTCTAAATCATTCCAAGACCATGTCTTAAGATAGTTGATTACAAGCGTTACATGTG
CCTGTGACATTTCATGCTAAAGAACTTCTGAAACTATGACAGTAAGGTTGAACCTTTTAAACAT
TCTCTCATACCTCTGAGGATATTGCTGATATAGTCTTTTGATCTGCATTTCTTATAATAGGAGT
CATCAGGCCCTAAAGTTGCAAAGGTCATTGTTAATGTGCATGGATAGGCTAATAAAAATTATAA
ACAGTACTTTTCAATTTCAATACCTTCTCTGTAGCAACTGCGATAGATATATCAACTGAAACAC
ACTTCTGGGCTTGTTCCTTGTCATTGTTCCAGTATG
Conservation Information
Conserved circRNAs NA
PMCS 0.12379931
Functional Information
Coding potential Y
Potential coding position 17599721-17599886(-)
17599740-17599886(-)
Potential amino acid sequence MQIKRLYQQYPQRLSSWLKRHVLGSLLLMNFREGLSAYWNNDKEQAQKCVSVDISIAVATEKGL
MTPIIRNADQKTISAISSEVKQLAEKARAGKLAPNEFQGGTFSILEQ*(-)
MTPIIRNADQKTISAISSEVKQLAEKARAGKLAPNEFQGGTFSILEQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017