Detail information of BGIOSGA006497_circ_g.11


General Information
CircRNA Name BGIOSGA006497_circ_g.11
ID in PlantcircBase osi_circ_011695
Alias Chr02:16546296_16551166(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 17157778-17162624  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA006497
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA006498_circ_ag.1 BGIOSGA006498_circ_g.1 BGIOSGA006498_circ_g.2 BGIOSGA006498_circ_g.3 BGIOSGA006498_circ_g.4 BGIOSGA006497_circ_g.1 BGIOSGA006497_circ_g.2 BGIOSGA006497_circ_g.3 BGIOSGA006497_circ_g.4 BGIOSGA006497_circ_g.5 BGIOSGA006497_circ_g.6 BGIOSGA006497_circ_g.7 BGIOSGA006497_circ_g.8 BGIOSGA006497_circ_g.9 BGIOSGA006497_circ_g.10 BGIOSGA006497_circ_g.12
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA006497-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGTTATGGTGCCAACAAACCCAGCTTTCACTGTTACTGGAAGCCGAAGAGAATTCAGTGCAT
CAGCCTTCAATTTTAGGTCTTTAAGAACAACGTCACccttccgcagcttatctaatgctacacc
agcatcaaatgtctcgttaccgtcttcgtcgactgtaacggctgcaagtcttgacaacgtgaag
ccagatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCCGCAGCTTATCTAATGCTACACCAGCATCAAATGTCTCGTTACCGTCTTCGTCGACTGT
AACGGCTGCAAGTCTTGACAACGTGAAGCCAGATGCAAATGGATGCCCAGAATTGCTGGTAGAA
AAACAAAGAATAAATTTACGGAAGACATTGGGATAAAAGAAAGACTAAAAAAGTGTGCAAATGA
CTTAGCATACCTGACAGAATCTTCATATCTGATATGCACGTTGCTGATGGTGACTTTAAGGTTT
CCAATAATTGTTGATATTAAATTGTATAGCCATGAATTACTCCCTGGTACCTGCAGCATCCAAC
AAGCACTATCAAAAAACAAGCAACAAAAATGTGTGTAATCCATATTAAACAATCGAACAGACAA
ATAAGAGAAATGACAGAAACCATAATAGGTATTAAAAACAGTAATGGACATCCAGAAACACCAA
AACCCAACTTGAACTTTCACAGCTAACCTTTTAGAACTATTGACCTACAAAGTTTAAGACAAAG
TGCATGTTCAGATGCTATAATACTTTAAACCTGTACTATATGATAAAACTTAGTGTCATGGAGT
CAAAGGATAATCCAAAAAAAAAAAGTTGTTTTTTTCCCATCATCACAGTTAGAGCTACAGACAG
AACAATAACTTCAAATGGACAAATATCCCCAGGACCACAATTTTGTTTTCCACTAAAACAGCAT
GCTTTCATGGAATCGACTATAATCAAGTCATCAATTAGTCATTAATGTGTAGTCACCCGCTGGC
AGACAAATAGCACCATAACCACAACTTCAAGTAAGTCAGGACAATGGACTAAAAGTAACAGGCT
AGCTTCAGCTGGACAGGAGAATCGCTGCCTTGGCATGCAAGAGCAGCCAGATAGAGTGACAACA
AAGGAGCAAGATCAAATTCGAATTGTCTTCACAAAATTATCCTCCAGGGTAACACTATTTATTT
GTTTTAAGTTATGACAAAAAGAAATTGAGATAAACAATAAATTCTTCCATCAAATCATTAGGAA
GGCAAGCAATGAACAGGAAATATTCTTACATCAAAGGTATAGGTACTTCAATATTTATCAAATT
TAAAAATACAACCTAAATAAAAAACACGTCTAAGCTAGAATATTTAGCCATTAATGAATGAATG
AATGAACGAATGAATAGGGAAATTGGAAAGAATTGGCACACGGTCAATTAACAGGAGAGCTCCA
GCAATATTGTTTATGAAAAAAGAAATTAATATCAAAGGCCATCAACCTGACCATACACTCGAAT
GTAATATTACAACTTCAAGAAGAAACATGATATCCATCTATGGGCACCTAAAATTGCTCTAATA
TTGTGCCTCAAGAAGTTTGTTTTTATATGATTATGATTGCACTTGTTGACATCATCTTTTACTC
TTATAAAATGAGGTGAGGTGATGGTGTATTCAACATGTCACTGATATATGTAGCATGACTTTCA
TGTTTGCATGCTCTTTTGTAATATTTGTATTCTTTGCAAGTGCATATATATTCACTGATTGATT
CAGCATATGTTTTGCATTTTGATCTTCAGACTATAGGGCACTTTTTTTTGGCATCCATTACAAT
GGGGAAGTATGATGTAATTTCCAAATGTCATAACTGTTCACAACTATCTGAGTATTGCTTGCCA
GAATATCGAAATAGAATACTAGAATTAAGCTTTGTGAGAGAAACAGGAGAAAAAAATCATACAG
GTCCTCCTTTCGAGCTCCTACTTGTTGCTTCAAGAGTTGCTGCCTCTGCAGCCTGCGGATAAGA
CCATTAGAGCTTGAGCTTTGCATAAAGATGATCGTGAGCATTATCTTTGAGGGGAAGCAGAGAA
ATAAAATAGGTGAAGCAGAAGATAAAAGCAAGAAAACAATAGAAGTAAAAATCTGGTTCATAAA
GCTATAATTCCATATAATGATTGCTAAAGCATATAATGCAAATATGTGGAACAGTTTCAACTCT
CGTATGATTGCATTACAGATCACTATGAAACATTTGACTCTTGGAGGTCAGCTCTCACCTCAGT
CCCATCTGACCTAAATTAACCTAAATGATACACACTCGTCACTTGAATGTACCACACATTGCAT
GACTACTTTTACAAACACTATTGTATTGTACCAGCTCCTGGAAGCCAATAAAATTGCAATTTCT
CACTTGCAAATTGTGCATAAAAAGTTCAGTGCTCCATGTTTAATTTTTTTTCCTCGAACATGCA
GGAGAGCTGTGTATCATTGTATCAAAAGAAGAAACCAGGATATAAAGCCTTATAAAACCCACCA
CACACACCACACTGAGACTGTTGAAGTTGCATCCGTACCCGAGACTAACAAGCACCAGACAACC
TTGGCCAACATTTCTGCTTTGCAAATGCCGTATAATATATGTTAATTAAAGAATAAATTGAGCC
ATAGGTACAACAGATCGTGCTGTGGGTGCACATAGGCCATATAATTTGATGTTTGCTCCCCTTA
GTCACCTTTCTTGTTTTAAGCGGAGCATTCAGCACAAAATATTACCCTGTGACAACGAAACGCA
CAAGTAGCATTGACTCACCCATCTCTTTATGTGTCCCGCTCTCAGATTCACCCTCCTTTCTCTT
TGTTTTCTCTCTATCCCGATATTGAAAATAAATGTGATATTATGTTTTTACCTTTCTGTTCTGC
AAATACATATGCACAGTTGATGCTTATGACCTTAAGTTACCATGACCATGAATGATTACAAGGC
AGCACAATGCATGTTTCGGCCATGTGTTAGGTTTTTATTACCCTAGTGTGCACCACCTAAGCAA
GCTCAGTGATTCAAATGAGCAATTCTCAAGCGTTGCAGCCTGCATGCACTCACCACCCACAAGT
AGTATTATAACTGCATTTTACTCGATACAAGTGCTATGTTTCATATACAGTGAATAGTCAACAC
ATAGTCTTGTACGCACTTCTTGTTTCCTTCTGTTCAAATAAATTCGGAGATAGCTATATTTTGT
AAAGAAAAGGTTTATAAATGTACTTGAAAGGAGTTTGGAGGAAGCTGCATAACCTGGTTTGTGG
TCAAGCGGAACCAAGTTTAAAATAGGTGATCTGACCACCCAACTAACATCTAACATGATCTCAC
AAGTCACAACAAAAGAATGAACAGAAAACAAATATTATACATTAAGCACCTAACAAATAAACAA
TATCATGGTGAAAATATTGCTCTGCTACATCAATTAGGCATGTTGATTTCATCAGGTGGTCAAA
TACATAAAAAAAGGAGGTACACTACCAAGTACAAGTGCCTACAAAACATACATTATGATGACTA
CCCATTCCTTACAAGAACACATTCAATTTAAGGTTATTTAACTTATTTCAAATTAACCAAATTG
TCTCGAATGGAAAAATAACAAAAAATCAGAGTTTTAGTTCCATCATACCAACCTATTGAAGTAG
AGCCTAAAGTAATTAAAAAATGCCCCACATATAATTGTATTTCATTATTATGGTGATCAAATAT
TCCTACAGTGGTACTGTCAAAAATAAATACTTCCAAAACTATACTTCTGAACCTACTAGTCTAC
AAGAGACCTTATGAAATGGAGCAATTAAAACCAACAAACATTTTCCTCGGATATGGAGAACTTT
CAGAGGTATTGACTTCTTGTTAACAACATATAGTCTCAAATTTAACTAATAATAGATAGTTCTA
TTGACTGTTCAAACAAGGGGGTAAAAAACTCATGAGAGAAGTTGCAAACAAACCTCAATCTGCT
GAAGTTTTGCTTCAAAAAGTTTCTCTCTATCTTCTTCCTAACACAAAAATGTGAAAAATATTAA
GAATAAGGGACAAAGAATGACATGCATAGAATAGAAATGGCATCACCAATAACACAATACCAAA
ATATAGTTACATACCTTCAGAGTCTGTCCATCAGGGGCAGGATGAGCAAGAACAAACAGACGAT
CAATAAGAACAATAACTGGCTCTTTACCCAAGCTTTTCCATGGAACCTATTAAAAATCAATATT
TTTTGTGTGTGAACAATTAACAGGTACAAGATAAACAAATACAGTAGCAAACTTGATATTATAA
GCTGCAGGCAGCAAAATCATGTTCAGCAATTCAACCACAGGATGTTATCATTTGCTATCCTGCC
AAACCAAAAACATACAACACAACTATTTGTTTCCGTTTTAAAATGCTTCCCAATGTACCCATTA
GATGAAAAGAATGTAACTGTACATTCATCAATAAAGCTAGTTGCTGATGGTTCCTTTTATGAAT
CCTTAAATAAAGTTTTACTAAGGTTTGAGGCCCATTTCAACTGTATAACACAAGAAGTGATTGA
CTATGTAAGGTTGCTGCTGTGAATGATTTGGTTTGCTGGCCAATCTGAAACTTGAATGTCATGG
AATCCTCTATCTGAAATTTACTGCCGTGTCCTTTGTTCTCACTGTTTGGTACTTTCTATCAATG
AGGTTCTTTGCTGTGGAGCTGTTGCCAGAGAGAAAAATGAGCGCTGCTTCATTAGAACCAAGAA
GCTAGGGGTTAAGTTGTCTGTGCGCATATTCACATATACCTCATTTTGATGCTTCCTGATGTTT
AGTTAAAGCAACATAGGAAATTATTTGCGGCTATGTTTAGTTAAATTGCATGATTCTAGTATTC
TGCTAGTTTTTCCATGTCAGAAAACTTAGGGCAACATAAGTCAGGCTCAGAAAACAGAAAATAA
CAAGTACCTTTAAAGTTATGGTGCCAACAAACCCAGCTTTCACTGTTACTGGAAGCCGAAGAGA
ATTCAGTGCATCAGCCTTCAATTTTAGGTCTTTAAGAACAACGTCAC
Conservation Information
Conserved circRNAs osa_circ_014659
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021