Detail information of BGIOSGA006497_circ_g.3


General Information
CircRNA Name BGIOSGA006497_circ_g.3
ID in PlantcircBase osi_circ_003911
Alias 2:17144593|17148205
Organism Oryza sativa ssp. indica
Position chr2: 17144593-17148205  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA006497
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA006498_circ_ag.1 BGIOSGA006498_circ_g.1 BGIOSGA006498_circ_g.2 BGIOSGA006498_circ_g.3 BGIOSGA006498_circ_g.4 BGIOSGA006497_circ_g.1 BGIOSGA006497_circ_g.2 BGIOSGA006497_circ_g.4 BGIOSGA006497_circ_g.5 BGIOSGA006497_circ_g.6 BGIOSGA006497_circ_g.7 BGIOSGA006497_circ_g.8 BGIOSGA006497_circ_g.9 BGIOSGA006497_circ_g.10 BGIOSGA006497_circ_g.11 BGIOSGA006497_circ_g.12
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA006497-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACAATCTTGCCGTATCTTTTTGGTGAGAAGTGAATATCCAGATTCGGCACTTGAAAAGAAAC
ACGAGTTGATGGATAACTCGGGTGTGGAACTTTGATcttgcctccacttccaaggagctctaac
attacaacctcttctggatctttcttcttcctgtccaactgaaagaaatgcatagataacaaga
agtcaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGCCTCCACTTCCAAGGAGCTCTAACATTACAACCTCTTCTGGATCTTTCTTCTTCCTGTCC
AACTGAAAGAAATGCATAGATAACAAGAAGTCAATGAAACAATAAGCATTAGAATGACTAGAAC
ATGACAAGTCCAGTAAGAACAAACTATCTCATGAACAAATAAGATGTCAAGATGGCAATTCAAA
ACAAATTAGAAGTATACCTTTGCATACAGCGAAAGCTTCGTTTCAACCACAGAACCATTCACAA
GAAGATCCACTGATCCCAAGCTGCTCAGCCTTGGAGTGCTTGGTTCTGTTGTACTGACAGGGTC
TCCTAGTATGTTCACTTCAGGAGGGGCCTACAAGAAAGTGGAGAAATACCATCAGACAAACTAT
ATACAAACTTCAGGTCCTATGTTAAACATTATAAAGTAAAGGAACGCTTACAGAAGCTTGATAT
GTTGCTTGGACAAGCGCTTTCATCCAATTGGCCTTCTCGATTTCATTATGGAATTCAATTATCA
GTGTGCTAGTTGATTCCAGCGCCTGCAAATGGAACAATGCTCAGATCAAAAAGGGAATAAAAAA
CAAGTTATACGGCAACACTTCAAAAGAACTAAGTATTCCTTCAGTAGATTTTGTCAAGACAATG
GTACCCCAACCCGAGCTTTTGACTGTTAAACTTCCTTAGGTGTAGCGCTAGCTATAACATGGCC
CACCTGATCCAACTCATCATCTTCTTCTTGCTACTAAAACTGATATACCATGGTGAGAACGTCT
TCTTTGACTGATTTTGTTGTTTCTGCTTCCTCGTCTCCATTGTTGGCACATGGCCTACTTGACT
CATAATTGCCAGGATCAGATGTGCACTTCTCTGCACGATGGTTTATCAACTTCTTCCTGGCACT
TCAGTTCTACATTCCACTGCTCGGCACTACAGGGATCTCCAGATGGGCGTGACTCATCACTGTA
TGACATCGTTGTTAAATCTGGCAGTTTTAGAACTTGATCAAGAACTAGTAGGAAGTAGCTATTG
GTTTTACCATCTTCTCTCGTTTACTAGTTCATTGGATCTCATTGTTCTCATTGTACCCACCACC
CAGACAAGAGGAGAGAACGGACAGGTCGCTAGACTTAATCACTAACATTACTACATACTCCATC
CGACCGAAAATATAAGGACTTTTGGAGTTAGACGCAAGTTAAGGAGAAAGATAAAACAAAATGA
GGTGAGATGAGAAAGTAATGAAGGAGAAAGATAAAATAAAATGAGGTGAGATGAGAAAGTAAGT
GGAGAAATTAAATGAGAAATGGTTGTGATTAGTTGAGATGAGGAAGTAGGTGGAGAAGTACTCC
CTCTGTCCCAAAATATAACAACTTTGCCCTCAGGATTTGTCCCAAAATATAACAACTTCTCCAC
CAACATTCTCTTCCCAACCAATCACAACTCTCCACCACACACTTTTCCCACCTACCTCCACTAC
TCATCCAATCACAACCCTCCACCACTCACTTCTACCTACTTTCTTAATAACCGTGTCCAACCCT
AAAACTTCTTATATTCTCGGATGGAGGGAGTAGTTAAATTTTGGGACGAAATTCAAATGTTAAT
GGTAGCTATATTTGGGGATGGAGAGAGTACTGTTCTCTGCGCCTACTTTCCTACCAAAGGCATC
TCCATCTGCTAGCTCTTTCCTAGGATTATGTAACGATCTGTTTATCATCTATAATAAACCATAT
TGAACACTTTACCAGCAAAAGTTGTCCAGACTCTTCCTTTATATGCTACAGAATTATTTTTTTT
TTGTCATTGCCATCACCACACTGTTAGAAAGCTGTAAGAGAGAAAAGCCTTTACGTTTTGGGGA
AAATCCCCTCTCATTCTTCTTCACCTAGACTCCTACAGGATCCCCCCCCCCTTTTGCCCCCTGT
TGCTGCATGCTATACATCCATGGATGATGCACCTTTTCCTCAGAATTTCGTGGTGAGCATTACG
TTCGTGAATTACTTCCATAGCAAGATTTGCACGGTTGATGATATCAGCCCAAGTATAAATAACG
CGACCTTGGCTATCAACTACAGATGGTTGAAATTGAACCCATTTAGATTGAAAGCCATAGTCCT
AATACCTAAAGCAGTGAACCAAATCTCTACCTAGTTGACATTGATAACAACGATCTAATGAATT
ATGAGTTTAATAGATCCTCTTTAGCATAAAGATGTATATTTCTTACTCATCACTTATTCCCAAA
CCTCGTATGGGGCAAATCGTTTTCATTTACCATCTCAGGGAAATCCTGCCTCCCAACCACTAGC
ATCCTACTAATGGTGTGTTGAAACAAGATGCAGCCTTTTCTTCTATTCCTCATGAAATCTATTG
AACAATTACTAAGCAATTTGGCATCAACAGAATTGAGAAGGGAGGGGGATGAAGAAAACAGGAG
GCAAATCAGGAATTCAGCACTTGTAGATTCCATAGGATTTCTTATAATTTGGATCTGCTGTTTT
GGTATCATTCAGGGAAGTAAACTCTCCAGTGAGTGGAATTAGAAGAAGCCAAACAGCACAGTTG
AATAGTATACCTTCTGCATAGGCAACCCAAAGTAAAAATAATACCCGGAAGGTTAAATGGTATA
CCTTCTGCATGTCCACACCTCTAGAACACACAGCAATACTGTAAAGAGACCCACCAACACTAGT
TGATGGAACCTCAATTACTTGACGGCTAGCCATGCTGCAACATCAAACATCAAAAAATACATAA
ATAAAAAACAGAGCAAGCATTCGCAAATGCAGAAAAGGGAATAAACTTGATTGTGTACCACTAG
AAGGGTATGTGCTTAAAATTATTCCAGTACCTTCAGCCTTTTCTCTAAAACAGGAAGGGAGAAT
TCTACCCACATCTACGGAAATAAAATCCTACTATCTCTAATGTTCCAAAACTTCTCAAAATGAC
TTCTTACACTTTCTTAGTACACTAACCCAAAATATTCGTTCATTGATTAAAAAAAATCAATACC
AACAAATGATCACATCCAGAAACAATGCTGCATAGTACTATGTCAATCATAGTCCCTACCACTC
ATGTGCATAGACATGAAGTTGCACATAGTTTAGACTGAGAACAACAGAGAATTTCATCATTGCT
TCATTCAACATGAAGATAATGATGAAAAGATTGCAGTACATACCTACAACACCTTTGGTAATCC
TGGGACACTTCAGACTCCAAGATGTACAGATACATCCCAGATAATACAACATAACTTGTATGCC
ATTCAGCTAGCGAATAACCAAGACCCTTGCATCCAAAATAAAATATACAAAACTCTGTTACTGT
ACTGCATAAATGCATCATATGAGAAGAGCACTCAAGAAAAGAAAGACAAGGCAATACCTTCCAA
ACCAATGTTCTAGCATCACCAGCTAGATCAGCAGGATACCAAGGTGCCAGGTTACAATTTTCAC
AGCTATCAGAATCTTCACTATCACTTCCCTTCAACTTGCAAAGTACACCAAGTAGTTCAACAAT
CTTGCCGTATCTTTTTGGTGAGAAGTGAATATCCAGATTCGGCACTTGAAAAGAAACACGAGTT
GATGGATAACTCGGGTGTGGAACTTTGAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 17147829-17144595(-)
Potential amino acid sequence MYLYILESEVSQDYQRCCSMASRQVIEVPSTSVGGSLYSIAVCSRGVDMQKALESTSTLIIEFH
NEIEKANWMKALVQATYQASAPPEVNILGDPVSTTEPSTPRLSSLGSVDLLVNGSVVETKLSLY
AKLDRKKKDPEEVVMLELLGSGGKIKVPHPSYPSTRVSFQVPNLDIHFSPKRYGKIVELLGVLC
KLKGSDSEDSDSCENCNLAPWYPADLAGDARTLVWKGLGYSLAEWHTSYVVLSGMYLYILESEV
SQDYQRCCSMASRQVIEVPSTSVGGSLYSIAVCSRGVDMQKALESTSTLIIEFHNEIEKANWMK
ALVQATYQASAPPEVNILGDPVSTTEPSTPRLSSLGSVDLLVNGSVVETKLSLYAKLDRKKKDP
EEVVMLELLGSGGKIKVPHPSYPSTRVSFQVPNLDIHFSPKRYGKIVELLGVLCKLKGSDSEDS
DSCENCNLAPWYPADLAGDARTLVWKGLGYSLAEWHTSYVVLSGMYLYILESEVSQDYQRCCSM
ASRQVIEVPSTSVGGSLYSIAVCSRGVDMQKALESTSTLIIEFHNEIEKANWMKALVQATYQAS
APPEVNILGDPVSTTEPSTPRLSSLGSVDLLVNGSVVETKLSLYAKLDRKKKDPEEVVMLELLG
SGGKIKVPHPSYPSTRVSFQVPNLDIHFSPKRYGKIVELLGVLCKLKGSDSEDSDSCENCNLAP
WYPADLAGDARTLVWKGLGYSLAEWHTSYVVLSGMYLYILESEVSQDYQRCCSMASRQVIEVPS
TSVGGSLYSIAVCSRGVDMQKALESTSTLIIEFHNEIEKANWMKALVQATYQASAPPEVNILGD
PVSTTEPSTPRLSSLGSVDLLVNGSVVETKLSLYAKLDRKKKDPEEVVMLELLGSGGK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021