Detail information of Os02g0470600_circ_g.8


General Information
CircRNA Name Os02g0470600_circ_g.8
ID in PlantcircBase osa_circ_014659
Alias NA
Organism Oryza sativa
Position chr2: 15967878-15972751  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0470600
Parent gene annotation Similar to phosphoinositide binding. (Os02t0470600-00)
Parent gene strand -
Alternative splicing Os02g0470600_circ_g.6 Os02g0470600_circ_g.7 Os02g0470600_circ_g.9
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0470600-00:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGTTATGGTGCCAACAAACCCAGCTTTCACTGTTACTGGAAGCCGAAGAGAATTCAGTGCAT
CAGCCTTCAATTTTAGGTCTTTAAGAACAACGTCACcttccgcagcttatctaatgctacacca
gcatcaaatgtctcgttaccgtcttcgtcgactgtaacggctgcaagtcttgacaacgtgaagc
cagatgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCGCAGCTTATCTAATGCTACACCAGCATCAAATGTCTCGTTACCGTCTTCGTCGACTGTA
ACGGCTGCAAGTCTTGACAACGTGAAGCCAGATGCAAATGGATGCCCAGAATTGCTGGTAGAAA
AACAAAGAATAAATTTACGGAAGACATTGGGATAAAAGAAAGACTAAAAAAGTGTGCAAATGAC
TTAGCATACCTGACAGAATCTTCATATCTGATATGCACGTTGCTGATGGTGACTTTAAGGTTTC
CAATAATTGTTGATATTAAATTGTATAGCCATGAATTACTCCCTGGTACCTGCAGCATCCAACA
AGCACTATCAAAAAACAAGCAACAAAAATGTGTGTAATCCATATTAAACAATCGAACAGACAAA
TAAGAGAAATGACAGAAACCATAATAGGTATTAAAAACAGTAATGGACATCCAGAAACACCAAA
ACCCAACTTGAACTTTCACAGCTAACCTTTTAGAACTATTGACCTACAAAGTTTAAGACAAAGT
GCATGTTCAGATGCTATAATACTTTAAACCTGTACTATATGATAAAACTTAGTGTCATGGAGTC
AAAGGATAATCCAAAAAAAAAAAGTTGTTTTTTTCCCATCATCACAGTTAGAGCTACAGACAGA
ACAATAACTTCAAATGGACAAATATCCCCAGGACCACAATTTTGTTTTCCACTAAAACAGCATG
CTTTCATGGAATCGACTATAATCAAGTCATCAATTAGTCATTAATGTGTAGTCACCCGCTGGCA
GACAAATAGCACCATAACCACAACTTCAAGTAAGTCAGGACAATGGACTAAAAGTAACAGGCTA
GCTTCAGCTGGACAGGAGAATCGCTGCCTTGGCATGCAAGAGCAGCCAGATAGAGTGACAACAA
AGGAGCAAGATCAAATTCGAATTGTCTTCACAAAATTATCCTCCCGGGTAACACTATTTATTTG
TTTTAAGTTATGACAAAAAGAAATTGAGATAAACAATAAATTCTTCCATCAAATCATTAGGAAG
GCAAGCAATGAACAGGAAATATTCTTACATCAAAGGTATAGGTACTTCAATATTTATCAAATTT
AAAAATACAACCTAAATAAAAAACACGTCTGAGCTAGAATATTTAGCCATTAATGAATGAATGA
ATGAATGAATGAATGAATAGGGAAATTGGAAAGAATTGGCACACGGTCAATTAACAGGAGAGCT
CCAGCAATATTGTTTATGAAAAAAGAAATTAATATCAAAGGCCATCAACCTGACCATACACTCG
AATGTAATATTACAACTTCAAGAAGAAACATGATATCCATCTATGGGCACCTAAAATTGCTCTA
ATATTGTGCCTCAAGAAGTTTGTTTTTATATGATTATGATTGCACTTGTTGACATCATCTTTTA
CTCTTATAAAATGAGGTGAGGTGATGGTGTATTCAACATGTCACTGATATATGTAGCATGACTT
TCATGTTTGCATGCTCTTTTGTAATATTTGTATTCTTTGCAAGTGCATATATATTCACTGATTG
ATTCAGCATATGTTTTGCATTTTGATCTTCAGACTATAGGGCACTTTTTTTTGGCATCCATTAC
AATGGGGAAGTATGATGTAATTTCCAAATGTCATAACTGTTCACAACTATCAGAGTATTGCTTG
CCAGAATATCGAAATAGAATACTAGAATTAAGCTTTGTGAGAGAAACAGGAGAAAAAAATCATA
CAGGTCCTCCTTTCGAGCTCCTACTTGTTGCTTCAAGAGTTGCTGCCTCTGCAGCCTGCGGATA
AGACCATTAGAGCTTGAGCTTTGCATAAAGATGATCGTGAGCATTATCTTTGAGGGGAAGCAGA
GAAATAAAATAGGTGAAGCAGAAGATAAAAGCAAGAAAACAATAAAAGTAAAAATCTGGTTCAT
AAAGCTATAATTCCATATAATGATTGCTAAAGCATATAATGCAAATATGTGGAACAGTTTCAAC
TCTCGTATGATTGCATTACAGATCACTATGAAACATTTGACTCTTGGAGGTCAGCTCTCACCTC
AGTCCCATCTGACCTAAATTAACCTAAATGATACACACTCGTCACTTGAATGTACCACACATTG
CATGACTACTTTTACAAACACTATTGTATTGTACCAGCTCCTGGAAGCCAATAAAATTGCAATT
TCTCACTTGCAAATTGTGCATAAAAAGTTCAGTGCTCCATGTTTAATTTTTTTTCCTCGAACAT
GCAGGAGAGCTGTGTATCATTGTATCAAAAGAAGAAACCAGGATATAAAGCCTTATAAAACCCG
CCACACACACCACACTGAGACTGTTGAAGTTGCATCCGTACCCGAGACTAACAAGCACCAGACA
ACCTTGGCCAACATTTCTGCTTTGCAAATGCCGTATAATATATGTTAATTAAAGAATAAATTGA
GCCATAGGTACAACAGATCGTGCTGTGGGTGCACATAGGCCATATAATTTGATGTTTGCTCCCC
TTAGTCACCTTTCTTGTTTTAAGCGGAGCATTCAGCACAAAATATTACCCTGTGACAATGAAAC
GCACAAGTAGCATTGACTCACCCATCTCTTTATGTGTCCCGCTCTCAGATTCACCCTCCTTTCT
CTTTGTTTTCTCTCTATCCCGATATTGAAAATAAATGTGATATTATGTTTTTACCTTTCTGTTC
TGCAAATACATATGCACAGTTGATGCTTATGACCTTAAGTTACCATGACCATGAATGATTACAA
GGCAGCACAATGCATGTTTCGGCCATGTGTTAGGTTTTTATTACCCTAGTGTGCACCACCTAAG
CAAGCTCAGTGATTCAAATGAGCAATTCTCAAGCGTTGCAGCCTGCATGCACTCACCACCCACA
AGTAGTATTATAACTGCATTTTACTCGATACAAGTGCTATGTTTCATATACAGTGAATAGTCAA
CACATAGTCTTGTACGCACTTCTTGTTTCCTTCTGTTCAAATAAATTCGGAGATAGCTATATTT
TGTAAAGAAAAGGTTTATAAATGTACTTGAAAGGAGTTTGGAGGAAGCTGCATAACCTGGTTTG
TGGTCAAGCGGAACCAAGTTTAAAATAGGTGATCTGACCACCCAACTAACATCTAACATGATCT
CACAAGTCACAACAAAAGAATGAACAGAAAACAAATATTATACATTAAGCACCTAACAAATAAA
CAATATCATGGTGAAAATATTGCTCTGCTACATCAATTAGGCATGTTGATTTCATCAGGTGGTC
AAATACATAAAAAAAGGAGGTACACTACCAAGTACAAGTGCCTACAAAACATACATTATGATGA
ATACCCATTCCTTACAAGAACACATTCAATTTAAGGTTATTTAACTTATTTCAAATTAACCAAA
TTGTCTCGAATGGAAAAATAACAAAAAATCAGAGTTTTAGTTCCATCATACCAACCTATTGAAG
TAGAGCCTAAAGTAATTAAAAAATGCCCCACATATAATTGTATTTCATTATTATGGTGATCAAA
TATTCCTACAGTGGTACTGTCAAAAATAAATACTTCCAAAACTATACTTCTGAACCTACTAGTC
TACAAGAGACCTTATGAAATGGAGCAATTAAAACCAACAAACATTTTCCTCGGATATGGAGAAC
TTTCAGAGGTATTGACTTCTTGTTAACAACATATAGTCTCAAATTTAACTAATAATAGATAGTT
CTATTGACTGTTCAAACAAGGGGGTAAAAAACTCATGAGAGAAGTTGCAAACAAACCTCAATCT
GCTGAAGTTTTGCTTCAAAAAGTTTCTCTCTATCTTCTTCCTAACACAAAAATGTGAAAAATAT
TAAGAATAAGGGACAAAGAATGACATGCATAGAATAGAAATGGCATCACCAATAACACAATACC
AAATTATAGTTACATACCTTCAGAGTCTGTCCATCAGGGGCAGGATGAGCAAGAACAAACAGAC
GATCAATAAGAACAATAACTGGCTCTTTACCCAAGCTTTTCCATGGAACCTATTAAAAATCAAT
ATTTTTTGTGTGTGAACAATTAACAGGTACAAGATAAACAAATACAGTAGCAAACTTGATATTA
TAAGCTGCAGGCAGCAAAATCATGTTCAGCAATTCAACCACAGGATGTTATCATTTGCTATCCT
GCCAAACCAAAAACATACAACACAACTATTTGTTTCCGTTTTAAAATGCTTCCCAATGTACCCA
TTAGATGAAAAGAATGTAACTGTACATTCATCAATAAAGCTAGTTGCTGATGGTTCCTTTTATG
AATCCTTAAATAAAGTTTTACTAAGGTTTGAGGCCCATTTCAACTGTATAACACAAGAAGTGAT
TGACTATGTAAGGTTGCTGCTGTGAATGATTTGGTTTGCTGGCCAATCTGAAACTTGAATGTTC
ATGGAATCCTCTATCTGTGCTTCCTCCCTAGGAAGCCTCAAAATTTACTGCCGTGTCCTTTGTT
CTCACTGTTTGGTACTTTCTATCAATGAGGTTCTTTGCTGTGGAGCTGTTGCCAGAGAGAAAAA
TGAGCGCTGCTTCATTAGAACCAAGAAGCTAGGGGTTAAGTTGTCTGTGCGCATATTCACATAT
ACCTCATTTTGATGCTTCCTGATGTTTAGTTAAAGCAACATAGGAAATTATTTGCGGCTATGTT
TAGTTAAATTGCATGATTCTAGTATTCTGCTAGTTTTTCCATGTCAGAAAACTTAGGGCAACAT
AAGTCAGGCTCAGAAAACAGAAAATAACAAGTACCTTTAAAGTTATGGTGCCAACAAACCCAGC
TTTCACTGTTACTGGAAGCCGAAGAGAATTCAGTGCATCAGCCTTCAATTTTAGGTCTTTAAGA
ACAACGTCAC
Conservation Information
Conserved circRNAs osi_circ_011695
PMCS 0.101990325
Functional Information
Coding potential Y
Potential coding position 15972659-15967939(+)
Potential amino acid sequence MVPTNPAFTVTGSRREFSASAFNFRSLRTTSPSAAYLMLHQHQMSRYRLRRL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017