Detail information of EPlOSAG00000018790_circ_ig.1


General Information
CircRNA Name EPlOSAG00000018790_circ_ig.1
ID in PlantcircBase osa_circ_015083
Alias Os02circ15853/Os_ciR1725
Organism Oryza sativa
Position chr2: 21494061-21498963  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os02g0565600_circ_g.1 Os02g0565600_circ_igg.1
Support reads 2/10
Tissues leaf/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCATTAGTTTGATATGCTTTAAAAGCAATGAATTGACTATCAGAAGGTCAAAAGATATAATTG
CAGAAGCTTCAATCTTTTTCCATGGTAACAACACCCctcagatctgttgggaacaatcttacac
cacctgtcgtcagaaaagcactagcagcaggccttcatcgattcagatgtagcaaagacctttg
gttattga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGATCTGTTGGGAACAATCTTACACCACCTGTCGTCAGAAAAGCACTAGCAGCAGGCCTTC
ATCGATTCAGATGTAGCAAAGACCTTTGGTTATTGATTGGTGGTTCCAAATTATTGGAAAAACA
TCAACCGTTTGGGGACACCAGATAGATTATTTCTGAAAAAAGTTGATGCAGTGATTAACTTTCA
TGATGCAATACTAATACCAAGCACATTGTGTATATCGGCAATCTCTCCAATTAATTCATGCACA
TTAAAATCTGAAATACAAATCAATCAATGTATTAATCCATCATTACCAATTTAACACTTGAAAA
AACTGCCTCTTGTATATATGTAAACTAGAATATCCTTCTAGATTGAAGAACACATTTCGCCATG
TGGAGTCTTCCGTCGAAGTGGATAACAACACTAGCGCTATTTTCTCTCAAATTTGAATGTTTAA
CGTGGACTTTATTGGAAACTTTTACACATCAGAGTATCGTGTTCCATATGTAGAACTTGAACTG
CTCCAAATCTAGATGTGCATGACAATTCATAATTTCATACAGTACAAAAAGTTCTGATGCACTG
AAAAACATTGCAGCACACAAGCACATGCTATCCCTCCATACAGACAAAACTGAAGTGGGATGAA
CCAAGCAAAACTAAAGAACATAATCCAGATGTGCTAATAGCCTGACAAACCAAATAGCACAACT
GATTATGTTGTGCCGAAACTGAAGAACTCCATGCCATATTTTGCCATAGTTACCACAGAACAAA
GCCTTGGCAGGGAAAACTATAACAGTTAAGCATTCTACATATTCTTATTGCTAACTTAATTAAC
CAATGTGTAACTGGAGAACCAACAGATCCGTAAGATGGTAAGGAATGACACTATGACAGTCATA
ATACACAAAATTTAAATTTTTAATAATTGTTCATTTTTAGTTATGAAAGGTATAGGTGTAAAAT
GAAATGTATAGTGCCAACGAATGTGATATGTATATGTCATATTTAATGAATGCCTCCTACAGAA
ATGCATCAGCTGATCTATCCTTCTTAGTTCTTACATGATAATTATTAATTGGAAATAATAAGTG
TGCAACATGACAATACATCGCGTAAGTTGCGTGTCTGCTATAGGAACTGAGGTGTCATTCTCTT
ACGTCAATTATACTCGACGTAAACTATAAGAAGAGAACATGATAACATAGATCTAAAACAGCGG
CATCACAATTAACAAAATTTACAATATGCAATAGATACCAAGTGACCTTGTAGCATGGCAGTTT
CTTGAATATTAAAATGCTACATGACTTGTCCATGATCATTTCTTAGCGGCCACAACTGAAAAAA
AAAACAATGATGTACAGATGCTTGTCAACTGACTTATTAGGAAATTCAAGTTTATAATGTTAGT
CATGGGAAATATGTGAATAACAATCAAGCTATGTTCATGACCTGCAAATACCAACTTCAGATAG
TTCATGCTCTAGATTATTAAGTTTCAATCCCATAGAACTTTCCAATTCTTGATTTTGTGCTAAG
CAGCAAACAATGCACCTTAAACAAGGATAGATTCAAGAATGACATGGCAGTCTTAAATGCATCT
TCCTATATACTAGAAAAGGGTTATGTATTAGCTCTTATAAGATCAATTTAAGTTGCACTTTACA
TGAAATATGTTAAATGAACATTTTTACCATTGTTTACCGATGATAGATGGCATAATTTAAAGAG
GCCATGCCAGAACAACACTGTCATAGCCTTTTCAAGTCACTTTAAAGCACACATCTATATTTTG
CTAGAAAGATATAATATGGGATCATTTCCAGTATTTGACTTGCGTGTAACAGGCATCAAATATA
TGAAAAGAAAACCTGATAACATTGAATACTGCCATCTGTAAACAGTCATTTGTGTGCCACTTCT
AGGAATAATACGATTGACAGGTCTTGATGTCCTCTATATCATGCATGCAACTCAGACTGCCTGC
CTGTTAAAATATTTCAGCAGGTTAAAGTATGAGCATTTTGAGTTCATACTAGTAAAAACCAACA
TTTATGAACTGTTTTAAGAATTTATAGTTGTTGTAAACAAATTTGTCCAAACATCACAAGTGAA
TGCATATGAACACATTGAAACAAAAGCATAGAGTCCCCAATTCCCATACTGAGAATAAACTACT
GTCACTCCACGAGCACTACTGAGCTTTTATTGTTTTTCAAAGGTTGACTTTCTATATTATTTGA
CTTCCAGGGCCCACATATTCTTAAAGCGGGTTACTCCACGTCCATGTTACTGCTGCCCTGAGGT
TATTGAATGCAGTATAGCTTAAAGATCTAATAACAATATAACATTCATGCTTGAGCAACTCCTA
ATTATTTGTAATATAAAGTCTATCTAATATGTTCAGTTTAGTTCCTTCTCTTTGTACGTGGAAG
TGTATCATTTAGTCATAATGCCCTCATGAATATGGATAAACAATGAGAGGTTTGTGTCCCTGTA
GGCGTAGCGCTGTCAATTACATATTTTCTACCAATGTTAAAAAGAAAATTCAAGATATTCACAT
TCAAGAGAAACTAAGCATGGAACAGGTTGCAGCACATATGAGATTGGTGGATACTGGATAGAAG
AGCACAAACTAGGCAAACTCACATCGCCATTGAAGAAAGAGTATAAAATAAAGTCATGCCACGG
CCACTTCCTCTATGAATAGTACTGTAATTCTTGCCGGATGCAGCATGTGATCGTATTTGTTATA
TCAAATGTTCTTTCAGGAGCACCATGGCATTGTTTGCCTACAGCATGTGCTACGGGATAAGCCT
TATGTATCACTCAAGACACTCATTAATAGAGCATTAGGGCAAGATTAATTTATTTCCCCACCAA
ACCTCCCTCCCTCTCAGTCTGTGCGTGTGTTACTATTAACAGTAGCTTCGGCTAAGGTCCACGG
TATATATGCAGTTAAGCAGAGAAAAGATAAGGAGGGCACAAGGATCAAAAGTAAAAAGGAACAG
ATGCTCAGGGCATGTTTTCAGTAGAAAATGTGATTTACCTGTAGCGTCAGAGCGACTGCATATT
TGCATTGCTGCTGTTATCTGCAGTCACCTGTGATAGGGTAAAAGGAGAGAATAAGTACAATTGT
ACTACCACTCTTCCTAGAAACAACATGCATTGTACTACATTCTGTCGGTACAGAACAAATCAGA
AACCGGTGTACTCTAGTTTTGGAATGCGGCATTGCAGTCTGCTAACTGCACGCGGGAGAAAAGG
CAAACAGAGCAGCATGCTAGTAAAGAGTGAACTGCAGAGGACACACAGTTCATGTCTAAAATGC
AAACCAATGCAAGACACCACGATCTAAAATATCAGACTTTATACAGAAATTAGAAGCTGAATCT
TGCACGAGTCTCCATGCTAAATCCTGGAAAATCGTAACAATGTTTTACATTATAGAATGTTTGG
ACATGAAATGCAGGAGCTTGTTCCAGGGATCAATTGAATGATTTCTTCATTCCTTTTTAGTTTC
TTCCTTTGCACAAACATAACAGCTCAAACACCAAACAGATATTCAATAGAAATCATGAAAAATG
AACCCAGATATGAAGCTTTTCCAATGAAAATAACATGAGGCTTCCTTTCGAGGGCATCATTTAT
CTTAGTTTCTGGAAAAAAAAATCATGTTCCCAGTTCAACGGATTTCACCAACAAATACGGCTCA
CTTGACACTTCAACAGATTAATCCCTCAAAAGAAAAGAAAGGAAGATCAAAGCACCAAAATTCC
AATGAACAATGCTCAAATGTGATTGGTATTGAAATATTATTTTATGAGCCAACTTAGAGAGTTT
TAAGAAGTCCATAAGTACAAGATGCACGCAAGAAGCGTATGTAACAAGAATACCGATTGCAGTG
ATCTCACAATAGGACAATATATACATATTATATGAACTAGAAACCCAGCACCAATCATTATCTG
CATTTGCATATAGATCTGCAATTGGAGGTGTCAACGGCACAGCAAACTGGATGCTTCAAATTTC
TGAAGAGGCCCTGTACCTATCGGGCGGTGGCATTACAAACATCTCGGTTGTAAACATCACCTTT
TATTATTCAACATAACTCATGAATCTCTCTTTCTGTGCTAGGTAAGTTGACTAAGCAAACTCAA
AGACATCAATTATCATTCTGGAGTCCTTACCTTCATTAATTGTGCAATGTGCATTAATTGTGCA
GGAATGTTTAGCATTTGAAAAGTACATGGAGCCTGGAGAAGATGCTTCATTCCCCCTAAACTAT
AGCGTGAAAAGTGAGTGAGGCAGAGCAATGGAAGGGGGCCAGTAGTCATGCAAGTAGCAGCACC
CTCTGACTGGATCAATCAAATCCTGGCTGTATTTTCATTCATTATCTTGTCAATTTTGCTGACA
AGCTAGACTTAACTATAACACACAAGTATATTTTTATGGACGTAAGCATTCAGGCAATAAAGAT
TGCTCATGCATGCATTGTGTACTCATGATCTAATGTCTAATCAAATGCAGAAGCATCTTTCTGT
TAGCTCAGTTCAAGAGGGCCTCAATACTAGATATGTAAAGGTGACAGTTCAGTTGCAAAATGCA
GAGATTTGTGTTTTTTTTATGGTTTCATAAGCCAAAATTGTACCAGACTATCTCTATATGGTGA
ATACGAAAAATAAAATATTGACGTAGGTTTTTCACTGGGACCATGGAAATTACAGATTGCAGAA
ATGTATTATTATGAGAAACAGAGCAAGAATTTGATTCGTTTCTTACCCACCATCACTTCCATCA
ACTTGCATTAGTTTGATATGCTTTAAAAGCAATGAATTGACTATCAGAAGGTCAAAAGATATAA
TTGCAGAAGCTTCAATCTTTTTCCATGGTAACAACACCC
Conservation Information
Conserved circRNAs osi_circ_004014* osi_circ_011878
PMCS 0.328267117
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015