Detail information of BGIOSGA006230_circ_ig.3


General Information
CircRNA Name BGIOSGA006230_circ_ig.3
ID in PlantcircBase osi_circ_011878
Alias Chr02:22232723_22237614(MH63RS2), Chr02:22783243_22788134(ZS97RS2), Chr02:22232723_22237614(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 23167214-23172105  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA006230_circ_ig.4 BGIOSGA006230_circ_ig.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCATTAGTTTGATATGCTTTAAAAGCAATGAATTGACTATCAGAAGGTCAAAAGATATAATTG
CAGAAGCTTCAATCTTTTTCCATGGTAACAACACCCcctcagatctgttgggaacaatcttaca
ccacctgtcgtcagaaaagcactagcagcaggccttcatcgattcagatgtagcaaagaccttt
ggttattg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAGATCTGTTGGGAACAATCTTACACCACCTGTCGTCAGAAAAGCACTAGCAGCAGGCCTT
CATCGATTCAGATGTAGCAAAGACCTTTGGTTATTGATTGGTGGTTCCAAATTATTGGAAAAAC
ATCAACCGTTTGGGGACACCAGATAGATTATTTCTGAAAAAAGTTGATGCAGTGATTAACTTTC
ATGATGCAATACTAATACCAAGCACATTGTGTATATCGGCAATCTCTCCAATTAATTCATGCAC
ATTAAAATCTGAAATACAAATCAATCAATGTATTAATCCATCATTACCAATTTAACACTTGAAA
AAACTGCCTCTTGTATATATGTAAACTAGAATATCCTTCTAGATTGAAGAACACATTTCGCCAT
GTGGAGTCTTCCATCGAAGTGGATAACAACACTAGCGCTATTTTCTCTCAAATTTGAATGTTCA
ACGTGGACTTTATTGGAAACTTTTACACATCAGAGTATCGTGTTCCATATGTAGAACTTGAACT
GCTCCAAATCTAGATGTGCATGACAATTCATAATTTCATACAGTACAAAAAGTTCTGATGCACT
GAAAAACATTGCAGCACACAAGCACATGCTATCCCTCCATACAGACAAAACTGAAGTGGGATGA
ACCAAGCAAAACTAAAGAACATAATCCAGATGTGCTAATAGCCTGACAAACCAAATAGCACAAC
TGATTATGTTGTGCCGAAACTGAAGAACTCCATGCCATATTTTGCCATAGTTACCACAGAACAA
AGCCTTGGCAGGGAAAACTATAACAGTTAAGCATTCTACATATTCTATTGCTAACTTAATTAAC
CAATGTGTAACTGGAGAACCAACAGATCCGTAAGATGGTAAGGAATGACACTATGACACAAAAT
TTAAATTTTTAATAATTGTTCATTTTTAGTTATGAAAGGTATAGGTGTAAAATGAAATGTATAG
TGCCAACGAATGTGATATGTATATGTCATATTTAATGAATGCCTCCTACAGAAATGCATCAGCT
GATCTATCCTTCTTAGTTCTTACATGATAATTATTAATTGGAAATAATAAGTGTGCAACATGAC
AATACATCGCGTAAGTTGCGTGTCTGCTATAGGAACTGAGGTGTCATTCTCTTACGTCAATTAT
ACTCGACGTAAACTATAAGAAGAGAACATGATAACATAGATCTAAAACAGTGGCATCACAATTA
ACAAAATTTACAATATGCAATAGATACCAAGTGACCTTGTAGCATGGCAGTTTCTTGAATATTA
AAATGCTACATGACTTGTCCATGATCATTTCTTAGCGGCCACAACTGAAAAAAAAAACAATGAT
GTACAGATGCTTGTCAACTGACTTATTAGGAAATTCAAGTTTATAATGTTAGTCATGGGAAATA
TGTGAATAACAATCAAGCTATGTTCATGACCTGCAAATACCAACTTCAGATAGTTCATGCTCTA
GATTATTAAGTTTCAATCCCATAGAACTTTCCAATTCTTGATTTTGTGCTAAGCAGCAAACAAT
GCACCTTAAACAAGGATAGATTCAAGAATGACATGGCAGTCTTAAATGCATCTTCCTATATACT
AGAAAAGGGTTATGTATTAGCTCTTACAAGATCAATTTAAGTTGCACTTTACATGAAATATGTT
AAATGAACATTTTTACCATTGTTTACCGATGATAGATGGCATAATTTAAAGAGGCCATGCCAGA
ACAACACTGTCATAGCCTTTTCAAGTCACTTTAAAGCACACATCTATATTTTGCTAGAAAGATA
TAATATGGGATCATTTCCAGTATTTGACTTGTGTGTAACAGGCATCAAATATATGAAAAGAAAA
CCTGATAACATTGAATACTGCCATCTGTAAACAGTCATTTGTGTGCCACTTCTAGGAATAATAC
GATTGACAGGTCTTGATGTCCTCTATATCATGCATGCAACTCAGACTGCCTGCCTGTTAAAATA
TTTCAGCAGGTTAAAGTATGAGCATTTTGAGTTCATACTAGTAAAAACCAACATTTATGAACTG
TTTTAAGAATTTATAGTTGTTGTAAACAAATTTGTCCAAACATCACAAGTGAATGCATATGAAC
ACATTGAAACAAAAGCATAGAGTCCCCAATTCCCATACTGAGAATAAACTACTGTCACTCCACG
AGCACTACTGAGCTTTTATTGTTTTTCAAAGGTTGACTTTCTATATTATTTGACTTCCAGGGCC
CACATATTCTTAAAGCGGGTTACTCCACGTCCATGTTACTGCTGCCCTGAGGTTATTGAATGCA
GTATAGCTTAAAGATCTAATAACAATATAACATTCATGCTTGAGCAACTCCTAATTATTTGTAA
TATAAAGTCTATCTAATATGTTCAGTTTAGTTCCTTCTCTTTGTACGTGGAAGTGTATCATTTA
GTCATAATGCCCTCATGAATATGGATAAACAATGAGAGGTTTGTGTCCCTGTAGGCGTAGCGCT
GTCAATTACATATTTTCTACCAATGTTAAAAAGAAAATTCAAGATATTCACATTCAAGAGAAAC
TAAGCATGGAACAGGTTGCAGCACATATGAGATTGGTGGATACTGGATAGAAGAGCACAAACTA
GGCAAACTCACATCGCCATTGAAGAAAGAGTATAAAATAAAGTCATGCCACGGCCACTTCCTCT
ATGAATAGTACTGTAATTCTTGCCGGATGCAGCATGTGATCGTATTTGTTATATCAAATGTTCT
TTCAGGAGCACCATGGCATTGTTTGCCTACAGCATGTGCTACGGGATAAGCCTTATGTATCACT
CAAGACACTCATTAATAGAGCATTAGGGCAAGATTAATTTATTTCCCCACCAAACCTCCCTCCC
TCTCAGTCTGTGCGTGTGTTACTATTAACAGTAGCTTCGGCTAAGGTCCACGGTATATATGCAG
TTAAGCAGAGAAAAGATAAGGAGGGCACAAGGATCAAAAGTAAAAAGGAACAGATGCTCAGGGC
ATGTTTTCAGTAGAAAATGTGATTTACCTGTAGCGTCAGAGCGACTGCATATTTGCATTGCTGC
TGTTATCTGCAGTCACCTGTGATAGGGTAAAAGGAGAGAATAAGTACAATTGTACTACCACTCT
TCCTAGAAACAACATGCATTGTACTACATTCTGTCGGTACAGAACAAATCAGAAACCGGTGTAC
TCTAGTTTTGGAATGCGGCATTGCAGTCTGCTAACTGCACGCGGGAGAAAAGGCAAACAGAGCA
GCATGCTAGTAAAGAGTGAACTGCAGAGGACACACAGTTCATGTCTAAAATGCAAACCAATGCA
AGACACCACGATCTAAAATATCAGACTTTATACAGAAATTAGAAGCTGAATCTTGCACGAGTCT
CCATGCTAAATCCTGGAAAATCGTAACAATGTTTTACATTATAGAATGTTTGGACATGAAATGC
AGGAGCTTGTTCCAGGGATCAATTGAATGATTTCTTCATTCCTTTTTAGTCTCTTCCTTTGCAC
AAACATAACAGCTCAAACACCAAACAGATATTCAATAGAAATCATGAAAAATGAACACAGATAT
GAAGCTTTTCCAATGAAAATAACATGAGGCTTCCTTTCGAGGGCATCATTTATCTTAGTTTCTG
GAAAAAAAAATCATGTTCCCAGTTCAACGGATTTCACCAACAAATACGGCTGACTTGACACTTC
AACAGATTAATCCCTCAAAAGAAAAGAAAGGAAGATCAAAGCACCAAAATTCCAATGAACAATG
CTCAAATGTGATTGGTATTGAAATATTATTTTATGAGCCAACTTAGAGAGTTTTAAGAAGTCCA
TAAGTACAAGATGCACGCAAGAAGCGTATGTAACAAGAATACCGATTGCAGTGATCTCACAATA
GGACAATATATACATATTATATGAACTAGAAACCCAGCACCAATCATTATCTGCATTTGCATAT
AGATCTGCAATTGGAGGCGTCAACGGCACAGCAAACTGGATGCTTCAAATTTCTGAAGAGGCCC
TGTACCTATCGGGCGGTGGCATTACAAACATCTCGGTTGTAAACATCACCTTTTATTATTCAAC
ATAACTCATGAATCTCTCTTTCTGTGCTAGGTAAGTTGACTAAGCAAACTCAAAGACATCAATT
ATCATTCTGGAGTCCTTACCTTCATTAATTGTGCAATGTGCATTAATTGTGCAGGAATGTTTAG
CATTTGAAAAGTACATGGAGCCTGGAGAAGATGCTTCATTCCCCCTAAACTATAGCGTGAAAAG
TGAGTGAGGCAGAGCAATGGAAGGGGGCCAGTAGTCATGCAAGTAGCAGCACCCTCTGACTGGA
TCAATCAAATCCTGGCTGTATTTTCATTCATTATCTTGTCAATTTTGCTGACAAGCTAGACTTA
ACTATAACACACAAGTATATTTTTATGGACGTAAGCATTCAGGCAATAAAGATTGCTCATGCAT
GCATTGTGTACTCATGATCTAATGTCTAATCAAATGCAGAAGCATCTTTCTGTTAGCTCAGTTC
AAGAGGGCCTCAATACTAGATATGTAAAGGTGACAGTTCAGTTGCAAAATGCAGAGATTTGTGT
TTTTTTTATGGTTTCATAAGCCAAAATTGTACCAGACTATCTCTATATGGTGAATACGAAAAAA
AAAATATTGACGTAGGTTTTTCACTGGGACCATGGAAATTACAGATTGCAGAAATGTATTATTA
TGAGAAACAGAGCAAGAATTTGATTCGTTTCTTACCCACCATCACTTCCATCAACTTGCATTAG
TTTGATATGCTTTAAAAGCAATGAATTGACTATCAGAAGGTCAAAAGATATAATTGCAGAAGCT
TCAATCTTTTTCCATGGTAACAACACCC
Conservation Information
Conserved circRNAs osa_circ_015083
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021