Detail information of BGIOSGA015211_circ_g.1


General Information
CircRNA Name BGIOSGA015211_circ_g.1
ID in PlantcircBase osi_circ_014290
Alias Chr04:19197082_19198401(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16330244-16331562  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015211
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015211_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015211-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGGAGCATCAACATTTCTTATGGGTGCACTCAAAATTTTGTTTTTGGATAATATTTCAACAG
TATCAGCCAGACTAGCATTTGAGGGTATCTCGATTAccttaacgagtttgcatggcttcatgag
aggaagccccagctcggagagtttcttagttccccagctctcaaaccaaggaagtccaacacac
tctgcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTAACGAGTTTGCATGGCTTCATGAGAGGAAGCCCCAGCTCGGAGAGTTTCTTAGTTCCCCA
GCTCTCAAACCAAGGAAGTCCAACACACTCTGCAAGCATGTGCACAACGGAAGATTGCGTAATG
ATGTTCTCAATCTTATCTCCCCCAATGTCTACTACTGGGAGGCTCTTCATCCTGTACTTGGACA
GCAGCAGCAACATGGTGAGGAATGTGTCAGATGTCTGCAGTGCCAGGAATGGCGCCCATCGGAA
GCTTCCTGAGATATCGCCAACCTATGGTGGCACAGGTGGTGTCAAGAATGGATCATGGTGAATA
CAACTGCTTTCAACTGAGAGGAAAAGAAAATCACCTTTGTGTTCTTGTAGAATTCAGAGGAAGT
GAGTGTTTCGAAAAAGCTCCCACCGACCGATGCGGTTTCATCTGATTCTGGGTCAGTGGTGGTT
TCTACCCTGCCAGATGATGTCCTTCTGAATGTGAAAGAGCCTAGCCTAGATACTAGATTGGCTA
CTGGTGACCCTACTGCAGAACCAGCCGTGCCATTAGCTGCAGCCTCAGACTATTGTAGGAACAG
AAAAAGCAACCCATGTCAGAAAGATGGGATGTTCATGAAATTCCTATAATTGTATCACCAAATA
TAAAATTACCTTCCCTATATCAGAGTATTTTTCTTTTAAACGAACTATTTTTGTGTTTCAATCA
GATTCAAGTGTCATTTTGCAAAGAACAAGCATGTAAGTAATATCTGAAAAATGTGTTTTCATGG
TTTAGCAGTTGTGAATGAATTGATGAGCAGTCCAACAAATACTAAGCCTAGATCGAGGTACTTC
CCATGCATGGGTATTTGAATTCCAAAAAAAAAATGAAAATGCTGTCAATACTTGAGAAAAGAAA
CTGAAAGCTCATTGTGAACACCATAATTAGGGTTGAATTTAATGATACATATTAAGCATGTCAG
AATCTACCATGTCATTAAAGCTGGACTAGATATGATACATCAAATTCAACTAGCGTGGTATGAT
ACTAAAATTCAACAGCGTGCACAAATATAGCATGATATGATACAACATAATATTAGACAAATAT
TTTTCTGAAAAAGAAACAGAGAGGAACTAAGTAGTGCTCTAGTATTAAGGTGGCTAACCTGATA
GAGCAACCACATAGCAATACCAGCAAATTCCACAATGCCAATGTATTTGTCAATCCAACTAGCA
TCTTCTGGAGCATCAACATTTCTTATGGGTGCACTCAAAATTTTGTTTTTGGATAATATTTCAA
CAGTATCAGCCAGACTAGCATTTGAGGGTATCTCGATTA
Conservation Information
Conserved circRNAs osa_circ_023588
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021