Detail information of BGIOSGA015211_circ_g.2


General Information
CircRNA Name BGIOSGA015211_circ_g.2
ID in PlantcircBase osi_circ_014291
Alias Chr04:19175237_19176201(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16330597-16331562  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA015211
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015211_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA015211-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGGAGCATCAACATTTCTTATGGGTGCACTCAAAATTTTGTTTTTGGATAATATTTCAACAG
TATCAGCCAGACTAGCATTTGAGGGTATCTCGATTAcctttgtgttcttgtagaattcagagga
agtgagtgtttcgaaaaagctcccaccgaccgatgcggtttcatctgattctgggtcagtggtg
gtttctac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTGTGTTCTTGTAGAATTCAGAGGAAGTGAGTGTTTCGAAAAAGCTCCCACCGACCGATGC
GGTTTCATCTGATTCTGGGTCAGTGGTGGTTTCTACCCTGCCAGATGATGTCCTTCTGAATGTG
AAAGAGCCTAGCCTAGATACTAGATTGGCTACTGGTGACCCTACTGCAGAACCAGCCGTGCCAT
TAGCTGCAGCCTCAGACTATTGTAGGAACAGAAAAAGCAACCCATGTCAGAAAGATGGGATGTT
CATGAAATTCCTATAATTGTATCACCAAATATAAAATTACCTTCCCTATATCAGAGTATTTTTC
TTTTAAACGAACTATTTTTGTGTTTCAATCAGATTCAAGTGTCATTTTGCAAAGAACAAGCATG
TAAGTAATATCTGAAAAATGTGTTTTCATGGTTTAGCAGTTGTGAATGAATTGATGAGCAGTCC
AACAAATACTAAGCCTAGATCGAGGTACTTCCCATGCATGGGTATTTGAATTCCAAAAAAAAAA
TGAAAATGCTGTCAATACTTGAGAAAAGAAACTGAAAGCTCATTGTGAACACCATAATTAGGGT
TGAATTTAATGATACATATTAAGCATGTCAGAATCTACCATGTCATTAAAGCTGGACTAGATAT
GATACATCAAATTCAACTAGCGTGGTATGATACTAAAATTCAACAGCGTGCACAAATATAGCAT
GATATGATACAACATAATATTAGACAAATATTTTTCTGAAAAAGAAACAGAGAGGAACTAAGTA
GTGCTCTAGTATTAAGGTGGCTAACCTGATAGAGCAACCACATAGCAATACCAGCAAATTCCAC
AATGCCAATGTATTTGTCAATCCAACTAGCATCTTCTGGAGCATCAACATTTCTTATGGGTGCA
CTCAAAATTTTGTTTTTGGATAATATTTCAACAGTATCAGCCAGACTAGCATTTGAGGGTATCT
CGATTA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021