Detail information of Os04g0382300_circ_g.1


General Information
CircRNA Name Os04g0382300_circ_g.1
ID in PlantcircBase osa_circ_023588
Alias NA
Organism Oryza sativa
Position chr4: 18748289-18749605  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0382300
Parent gene annotation Similar to SNF1-related protein kinase regulatory gamma subunit
1 (AKIN gamma1) (AKING1). (Os04t0382300-01);Similar to SNF1-rela
ted protein kinase regulatory gamma subunit 1 (AKIN gamma1) (AKI
NG1). (Os04t0382300-02);Similar to OSIGBa0092E09.6 protein. (Os0
4t0382300-03)
Parent gene strand -
Alternative splicing Os04g0382300_circ_g.2
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0382300-02:3
Os04t0382300-01:3
Os04t0382300-03:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGGAGCATCAACATTTCTTATGGGTGCACTCAAAATTTTGTTTTTGGATAATATTTCAACAG
TATCAGCCAGACTAGCATTTGAAGGTATCTCGATTActtaacgagtttgcatggcttcatgaga
ggaagccccagctcggagagtttcttagttccccagctctcaaaccaaggaagtccaacacact
ctgcaagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAACGAGTTTGCATGGCTTCATGAGAGGAAGCCCCAGCTCGGAGAGTTTCTTAGTTCCCCAG
CTCTCAAACCAAGGAAGTCCAACACACTCTGCAAGCATGTGCACAACGGAAGATTGCGTAATGA
TGTTCTCAATCTTATCTCCCCCAATGTCTACTACTGGGAGGCTCTTCATCCTGTACTTGGACAG
CAGCAGCAACATGGTGAGGAATGTGTCAGATGTCTGCAGTGCCAGGAATGGCGCCCATCGGAAG
CTTCCTGAGATATCGCCAACCTATGGTGGCACAGGTGGTGTCAAGAATGGATCATGGTGAATAC
AACTGCTTTCAACTGAGAGGAAAAGAAAATCACCTTTGTGTTCTTGTAGAATTCAGAGGAAGTG
AGTGTTTCGAAAAAGCTCCCACCGACCGATGCGGTTTCATCTGATTCTGGGTCAGTGGTGGTTT
CTACCCTGCCAGATGATGTCCTTCTGAATGTGAAAGAGCCTAGCCTAGATACTAGATTGGCTAC
TGGTGACCCTACGGCAGAACCAGCCGTGCCATTAGCTGCAGCCTCAGACTATTGTAGGAACAGA
AAAAGCAACCCATGTCAGAAAGATGGGATGTTCATGAAATTCCTATAATTGTATCACCAAATAT
AAAATTACCTTCCCTATATCAGAGTATTTTTCTTTTAAACGAACTATTTTTGTGTTTCAATCAG
ATTCAAGTGTTATTTTGCAAAGAACAAGCATGTAAGTAATATCTGAAAAATGTGTTTTCATGGT
TTAGCAGTTGTGAATGAATTGATGAGCAGTCCAACAAATACTAAGCCTAGATCGAGGTACTTCC
CATGCATGGGTATTTGAATTCCAAAAAAAAATGAAAATGCTGTCAATACTTGAGAAAAGAAACT
GAAAGCTCATTGTGAACACCATAATTAGGGTTGAATTTAATGATACATATTAAGCATGTCAGAA
TCTACCATGTCATTAAAGCTGGACTAGATATGATACATCAAATTCAACTAGCGTGGTATGATAC
TAAAATTCAACAGCGTGCACAAATATAGCATGATATGATACAACATAATATTAGACAAATATTT
TTCTGAAAAAGAAACAGAGAGGAACTAAGTAGTGCTCTAGTATTAAGGTGGCTAACCTGATAGA
GCAACCACATAGCAATACCAGCAAATTCCACAATGCCAATGTATTTGTCAATCCAACTAGCATC
TTCTGGAGCATCAACATTTCTTATGGGTGCACTCAAAATTTTGTTTTTGGATAATATTTCAACA
GTATCAGCCAGACTAGCATTTGAAGGTATCTCGATTA
Conservation Information
Conserved circRNAs osi_circ_014290
PMCS 0.190653986
Functional Information
Coding potential Y
Potential coding position 18749474-18748290(+)
Potential amino acid sequence MPMYLSIQLASSGASTFLMGALKILFLDNISTVSARLAFEGISIT*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017