Detail information of Os05g0162350_circ_g.8


General Information
CircRNA Name Os05g0162350_circ_g.8
ID in PlantcircBase osa_circ_026757
Alias Os_ciR10201
Organism Oryza sativa
Position chr5: 3655386-3660360  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os05g0162350
Parent gene annotation Hypothetical protein. (Os05t0162350-00)
Parent gene strand +
Alternative splicing Os05g0162350_circ_g.1 Os05g0162350_circ_g.2 Os05g0162350_circ_g.3 Os05g0162350_circ_g.4 Os05g0162350_circ_g.5 Os05g0162350_circ_g.6 Os05g0162350_circ_g.7 Os05g0162350_circ_g.9 Os05g0162350_circ_g.10 Os05g0162350_circ_g.11 Os05g0162350_circ_g.12 Os05g0162350_circ_g.13
Support reads 2/3
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0162200-01:10
Os05t0162200-02:10
Os05t0162200-01:10
Os05t0162350-00:9
Os05t0162200-02:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCCAACCAACGTCTTAACAGTTCAACTCTTTCGCCTCCACGGCATGAAACTGCTGCCTCTTC
CAAGCGTGCTACTGTTTTCTTAAAACTTTTGTAGTCctttttcagctgagcctcaagttcatct
ctctgcttctccaattcagcaatctcatcaagcacctcctacatcaggatataaaaggaaaaga
taagataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTTCAGCTGAGCCTCAAGTTCATCTCTCTGCTTCTCCAATTCAGCAATCTCATCAAGCACC
TCCTACATCAGGATATAAAAGGAAAAGATAAGATAAGGATTAAATAAATAGCAAAATAAGCAGA
GTAGAAGCCTAAAAACATATTCATTCCGTACCATATGTATGTAATACATCGAATGATGTGAACA
AAATATTAACATAGTACAGTAGAAATGTGTTCCTGGACACCATGTTAACCATGTAACCACTAAT
CACCTCCGTATGGCATGTTCAAGGATAAGAAGCTACAGATATAGCTGGACAAGCACATGCATTG
GACATATTGACAGGTAAATAGCGGAAGGGAAATGGCGAATGTGGCGTGCTTGGCATCCATGAAT
TCTATGCTGTGCAGGAATTCTATAGGGATTTTGCAGAAAAGCAAAAGATCCACTTTCACTATGG
AAATCCCCCATGAATTCCTATGAGAGCCCTGTGCTCCAAGTGGGACAAACATTTTGATTATTTT
TTTAATTAAATTTATAAGTTCAACAAGGCATTCCACATATACAACAGGCTAGCAGTTGTACCTT
CTCAACTGTGCTCACTTCATTCTCCTTCTTAACACGGAAGTTCAGAGCATCTTCTTTCTGGCGC
CTGGTATAAAAGCCAAATTAAAATCTCACCTATATTTGCTGGTAATACGATTTGAAACATACAA
AGAAAATGAGTCTAGAAAATTAATATGCCAAAAGAAAAGGAAGCAACACAAAGATAAAACTTCC
TGACAGTGAAAACAAAATGGAACATAGAACTTAAATAATCAGTAAATCAATACATTGCTAGTTA
AGTACAACCCTACAACTATAATTTCTGAAGTGCCGGTTTTGACTATCAAATAATCAACTGTTTA
AATACCCCAGGAGTCGCTTGCAAAAAAACATGGCAGTTCAGAGCAAATTAGATATCAAGTATAA
ACTAAGTATTCAAAGAAAAAGAATGATATACACATCATTGAGCAAGGATTTTTCATGTAGAACT
GGAGCAAAAATCTATATTACATACTATTGAGTGTTGACAAATGAGTTATGGATAATAGAATAAC
ATCTTTCGTACAGGAAAAACAATTTCAGAAATAAAACCTGTTCTCCAAAATACGCTGCTCTGCC
TTGGAGGATGAATTCGCAAGGGAATCTGCCAAGATCTTTAATTTATCAATCTGCAAGATGCTGT
GACATTGTTACAATCCATACACCACATACTTGCAGGACAAGAGAAGTTATTGACATAATGACTT
GAAGTAAAACTGTTGTGCTTACATGGTGACTACTGACTACCAAAAGATAAGCAGTACAGCGTTT
TGAGCCACACAAGTCCTACTTACTACAAACTTTCTCATAATTAAACTTCTATTGGTGTTTTCTA
AAAGCCTGCTGAATTGATCCTGAAAAGTAGAACCAGTATAACCAAGAAAAGCATATTGCCAACC
TAGACTGCATTCTAATGGGTTACCAGATGAGCAATTTAAGGAATGTAAAGGATTGCATCTCAAC
TTCAAAACTCAAAAACTTATAAAAAGAAGAGTAAGACATAAGCCTGCCTTCTGAGAATGGATCT
CCAGAGAGTCTCCAGGTGATATTGACTTCTTCTTCAGTACAAGTTCTTCCACTCTAGAGCACAA
ACGGACTTCAATAAGTGCTTCTTTTAAACCCTGGCAGACATGCAAGTATCTTCTTTAAGAACCT
TGAAAACAACATACTAGAACAGACAAAACAGATTAACAAGCACTTGAAAGTAGTAAATAGATGC
ACAATACATGTAAAGTAATGGAGGAAATAGTACAAATGTTCATAATCACATCGAATTATTTCTA
GGACTTTTCTGGTGACTATGTTGCCAGATTGGAATGCATTCATTTAAAAAATTATGTGATGTTT
TAGAACATGTGTGGTCAACACTCAACATTTTCAAAGTTTCACTACCAATGGAGTTTATATAAAT
TGATCTGAAATAAAGGCAATGTTTTTCTCATGATCTACATTTCATTTTGTTTAATGTTCCAACA
TATTTCTATTAAAAAAAATGATGAGTGGACACACATATGGGAGACCATGACAACATCCAAACCA
ATTACATGTTTGGATAGAGGGTGTATCATACAGCCAAAAAATCTATGGAGTCAAACTGAACTAG
AGACTTCTGTGAAATATCTGCATTTGGAAAGTAAGCATTCAAAAAGCAAACAATTTCACCAATG
CAAAATTAATTCCAAAGCCATATAGCATTGATCATTGAACTGCTTTGAACATTTAGCTACTGAG
CACTGTTCAATAAACTCTAACAAAAGAAACAAGAAAGTAAATCCATACTATATATAATTAGGTA
ATACCTCAATGTTTTCAACAGAAATATTCCCTGACGATTTATCTTGATCTTCAGTTATCTGGGC
TCGTGATTTCTCCTTCTCATCTAGCTTTTTCCACAACTCGAGGGTTTCAGCATCTATCCTGAAA
TCATGTACTAGCTTGAAATTAAGAAGCTAATATAGCGAGAAGCAAGCACCAAATGCCTCTTTAA
GAGTATTTGGAAGCCTTGGTTTCATAAGAATTGCAAGGAAAAAAAATTCTAATATTGATACACA
ATATTCTAAATTTTCAAAGTTCGGTGAAAACTTTCATTTGTTACATGAGGTGTGAGTTGTAAGA
GAGAGGAAAAGGGAACACAGTTTTCAGAGTTTTAAGCCACATGCACAAGCTAAAACCCTCATGA
TTGAAAACAATTTACAGATTGTAGGAGCAAAAGGTTAAAGAACACTTAACAAAAATGGTATACG
AGTCTCATAAGCGGGTCAATTATCACCTCATAATGTCAGCATTCCTCTTTAGCCCTGAAATGAC
ACTCTGAGTATATTCAAGTAGCTCTTCACGCTTCACCTGTTGACACAGATACAATGCATCATTG
GCCACATCTATCGTATAAAAGGTTGAACGTGTGTGCATCAGAATTCAGTTTTTCACTTCAAACA
TACATGAAATCTGCATCTTAGAAAATAATTGCAAAAATAAAAAATGGTAGGAAGTAAGCTTTTT
TTTTCCTTAAGAAAAGTTCTTGTCAGAAGTGAAGCTCCATTGACTAGTTAAAACCGATTAAACT
ACAATTTTCTAGGATACAATGAAACAATAAATAACTAGGCAAGAATTATGAACTTGGATGGAGT
AAATTAATCACAACCAGAAGCATACCAGGACTTCATCTTTGTAATTTGAAAGCGCCTTGGCCAA
GTCTTGTACAGTGTCCATGATTTTCTTGTTGACTTCTTTCCCTCCAGTAAGACACAGCCTGTAG
GAAACAAGATTAGCACCAATTGTAAATTACAAAAGATCCAGGTCAGAGAACAGAGGACAGAGAA
AGTCGAAGTAGCTGAAATTGTACATACACATACTGATGATGGGCAGAAAAATGTGCAATAGATT
AATAATAATAAGTATTTTACATATAACAATTGAGTGCATATAATTGTTAATGGAAAGCTAACAA
CATGGCATAGGAAACCTAAGTTAAAGTTGAATGGTGAACCAAATAGCAAACTTAGATTGAATAA
AGTAACAGATACAACTATCACTATGAATCTGTCAAATCCCTACTATTATAAAAATTGAAGACGT
TTTTGCCGGTACTTTGGTACGTCATCCGTATATGAGTCGGTTTTTAAGTTCGTTCGCTTTTGGA
AATACAGATCTGTATCTGAGTCGGGTTTAAGTTCGTTCGCTTTTGGAAATACAGGAACAGTCGT
ATAAGAAATCTCTTTAAAAAAAACTTAGCATGTAACTTGAGATGATCGGACTCCTAATTGCAGC
TCATGATTTTCTAGAAAAAATATATATCCAAGCGAATTCTCACAGTGAATTTCACCTTAACTAA
ACCATATAACAATAATAAAATTAAAATAGCCTTCACCCGTTGTAATGCACGGGCATTTTTTCTA
GTCCCTAATAAAATCACAGGGCAAAATAGAATCAATTCTAAGTTTTTTTTTCACCAAGACAAAT
GTTAGATGGTTTATAGGATAATAGGAGAAAAATATATGTGGTATTATGCTATTATGGATGCTGG
AAAGGAATGCTTATCATGCTGACAACAAATAACATCATGGCTCTTTTTTGGAAAGGAAAAACAT
CATGGCTCTTGTATTGTTAAATCCAAAGTCTCTGAAGGAAGCAATAGTTCTGAATTACTGTGTT
CACAATAATATTAAAGAGAGAATTCTACAAGCTGGCAAAAGTCCATCAACATTAGAAAAAACAA
AAGGAAAGAAAGAAAATATATTAGCAGGTGATCTTAAAAGCAGACTCACCCAAAAATTTCCAAA
AGAAGAGAAACTTCTTCCTCAGAAGGAGCTTCAAGAACCTGATTATAGAAAAGATTGGCAGTGC
ATAGCATCAAACCAAGTATGACCAAATAATATCATTCTAAGAACTAAAGTACAAACTGGCTGCA
GGAAAAAAAAGGTCAACTGAAATAGATTATACATATCCAGGAAAGAACTGTTGCACCAACTCAC
CATGGACAGTGTAATCCCCTCCAGTGCTTGACTGTATAGGAATACATCACGGAAGTTCATAGGC
CCTCCTTCAATGTCAGCATCATAAAACAAAGCCTGATCCCAACAGTTCAGTCTAAAATCAGCAT
GAACCAAACAATCTCAAGGAGATAACTATAGAAGGCTTTTGAATTAATGCCATCTTAAAATGAC
TACATAAGAAAAAGAAATGAAAATGAGACATACAAACTTACCAATGGTGCTTTTGAAATATCTG
TTTCACTAGAAGGATCACGATCTTCTGGATCCTTCAAATCTGATCCGCTAAGTTCAGCCTCTAT
GTCTTGTAACGCTCCCAACCAACGTCTTAACAGTTCAACTCTTTCGCCTCCACGGCATGAAACT
GCTGCCTCTTCCAAGCGTGCTACTGTTTTCTTAAAACTTTTGTAGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.094842884
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017