Plant Circular RNA Database

Detail information of Os05g0162350_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os05g0162350_circ_g.6
					
						ID in PlantcircBase
						osa_circ_026755
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 3654319-3660360  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0162350						
					
						Parent gene annotation
						
							Hypothetical protein. (Os05t0162350-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0162350_circ_g.1 Os05g0162350_circ_g.2 Os05g0162350_circ_g.3 Os05g0162350_circ_g.4 Os05g0162350_circ_g.5 Os05g0162350_circ_g.7 Os05g0162350_circ_g.8 Os05g0162350_circ_g.9 Os05g0162350_circ_g.10 Os05g0162350_circ_g.11 Os05g0162350_circ_g.12 Os05g0162350_circ_g.13 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0162200-02:12
Os05t0162200-01:12
Os05t0162350-00:11
Os05t0162200-02:12
Os05t0162200-01:12

General Information
CircRNA Name	Os05g0162350_circ_g.6
ID in PlantcircBase	osa_circ_026755
Alias	NA
Organism	Oryza sativa
Position	chr5: 3654319-3660360 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0162350
Parent gene annotation	Hypothetical protein. (Os05t0162350-00)
Parent gene strand	+
Alternative splicing	Os05g0162350_circ_g.1 Os05g0162350_circ_g.2 Os05g0162350_circ_g.3 Os05g0162350_circ_g.4 Os05g0162350_circ_g.5 Os05g0162350_circ_g.7 Os05g0162350_circ_g.8 Os05g0162350_circ_g.9 Os05g0162350_circ_g.10 Os05g0162350_circ_g.11 Os05g0162350_circ_g.12 Os05g0162350_circ_g.13
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0162200-02:12 Os05t0162200-01:12 Os05t0162350-00:11 Os05t0162200-02:12 Os05t0162200-01:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTCCCAACCAACGTCTTAACAGTTCAACTCTTTCGCCTCCACGGCATGAAACTGCTGCCTCTTC
CAAGCGTGCTACTGTTTTCTTAAAACTTTTGTAGTCcatgttttcttttccttctgttcattat
atgttgactggagctgccaggtatcctcgaggaaattgatccaggtcttgactacattggcttc
cacattac

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1191
Transcript exons: 3654319-3654449,3654540-3654647,3655386-3655451,3655959-
3656025,3656511-3656587,3656969-3657079,3657758-3657870,
3658228-3658301,3658611-3658707,3659723-3659775,3659930-
3660025,3660163-3660360
CATGTTTTCTTTTCCTTCTGTTCATTATATGTTGACTGGAGCTGCCAGGTATCCTCGAGGAAAT
TGATCCAGGTCTTGACTACATTGGCTTCCACATTACATGACGCGATAGATTTTGAGAGGTCGTC
CTCCTTTGTTTTTAATTTAAATATAATTTGATTGTTTGCTTCATCAAATTGGTCCCTCTCTTCC
CTGGTTTTCTTGAGGCGTCCAGCAGCAGCATTTAGTGATATATTGACCTTTTTCAGCTGAGCCT
CAAGTTCATCTCTCTGCTTCTCCAATTCAGCAATCTCATCAAGCACCTCCTTCTCAACTGTGCT
CACTTCATTCTCCTTCTTAACACGGAAGTTCAGAGCATCTTCTTTCTGGCGCCTGTTCTCCAAA
ATACGCTGCTCTGCCTTGGAGGATGAATTCGCAAGGGAATCTGCCAAGATCTTTAATTTATCAA
TCTTCTGAGAATGGATCTCCAGAGAGTCTCCAGGTGATATTGACTTCTTCTTCAGTACAAGTTC
TTCCACTCTAGAGCACAAACGGACTTCAATAAGTGCTTCTTTTAAACCCTCAATGTTTTCAACA
GAAATATTCCCTGACGATTTATCTTGATCTTCAGTTATCTGGGCTCGTGATTTCTCCTTCTCAT
CTAGCTTTTTCCACAACTCGAGGGTTTCAGCATCTCATAATGTCAGCATTCCTCTTTAGCCCTG
AAATGACACTCTGAGTATATTCAAGTAGCTCTTCACGCTTCACCAGGACTTCATCTTTGTAATT
TGAAAGCGCCTTGGCCAAGTCTTGTACAGTGTCCATGATTTTCTTGTTGACTTCTTTCCCTCCA
GTAAGACACAGCCCAAAAATTTCCAAAAGAAGAGAAACTTCTTCCTCAGAAGGAGCTTCAAGAA
CCATGGACAGTGTAATCCCCTCCAGTGCTTGACTGTATAGGAATACATCACGGAAGTTCATAGG
CCCTCCTTCAATGTCAGCATCATAAAACAAAGCCAATGGTGCTTTTGAAATATCTGTTTCACTA
GAAGGATCACGATCTTCTGGATCCTTCAAATCTGATCCGCTAAGTTCAGCCTCTATGTCTTGTA
ACGCTCCCAACCAACGTCTTAACAGTTCAACTCTTTCGCCTCCACGGCATGAAACTGCTGCCTC
TTCCAAGCGTGCTACTGTTTTCTTAAAACTTTTGTAGTC
Transcript length: 1196
Transcript exons: 3654319-3654449,3654540-3654647,3655386-3655451,3655959-
3656025,3656511-3656587,3656969-3657079,3657758-3657875,
3658228-3658301,3658611-3658707,3659723-3659775,3659930-
3660025,3660163-3660360
CATGTTTTCTTTTCCTTCTGTTCATTATATGTTGACTGGAGCTGCCAGGTATCCTCGAGGAAAT
TGATCCAGGTCTTGACTACATTGGCTTCCACATTACATGACGCGATAGATTTTGAGAGGTCGTC
CTCCTTTGTTTTTAATTTAAATATAATTTGATTGTTTGCTTCATCAAATTGGTCCCTCTCTTCC
CTGGTTTTCTTGAGGCGTCCAGCAGCAGCATTTAGTGATATATTGACCTTTTTCAGCTGAGCCT
CAAGTTCATCTCTCTGCTTCTCCAATTCAGCAATCTCATCAAGCACCTCCTTCTCAACTGTGCT
CACTTCATTCTCCTTCTTAACACGGAAGTTCAGAGCATCTTCTTTCTGGCGCCTGTTCTCCAAA
ATACGCTGCTCTGCCTTGGAGGATGAATTCGCAAGGGAATCTGCCAAGATCTTTAATTTATCAA
TCTTCTGAGAATGGATCTCCAGAGAGTCTCCAGGTGATATTGACTTCTTCTTCAGTACAAGTTC
TTCCACTCTAGAGCACAAACGGACTTCAATAAGTGCTTCTTTTAAACCCTCAATGTTTTCAACA
GAAATATTCCCTGACGATTTATCTTGATCTTCAGTTATCTGGGCTCGTGATTTCTCCTTCTCAT
CTAGCTTTTTCCACAACTCGAGGGTTTCAGCATCTATCCTCATAATGTCAGCATTCCTCTTTAG
CCCTGAAATGACACTCTGAGTATATTCAAGTAGCTCTTCACGCTTCACCAGGACTTCATCTTTG
TAATTTGAAAGCGCCTTGGCCAAGTCTTGTACAGTGTCCATGATTTTCTTGTTGACTTCTTTCC
CTCCAGTAAGACACAGCCCAAAAATTTCCAAAAGAAGAGAAACTTCTTCCTCAGAAGGAGCTTC
AAGAACCATGGACAGTGTAATCCCCTCCAGTGCTTGACTGTATAGGAATACATCACGGAAGTTC
ATAGGCCCTCCTTCAATGTCAGCATCATAAAACAAAGCCAATGGTGCTTTTGAAATATCTGTTT
CACTAGAAGGATCACGATCTTCTGGATCCTTCAAATCTGATCCGCTAAGTTCAGCCTCTATGTC
TTGTAACGCTCCCAACCAACGTCTTAACAGTTCAACTCTTTCGCCTCCACGGCATGAAACTGCT
GCCTCTTCCAAGCGTGCTACTGTTTTCTTAAAACTTTTGTAGTC
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	CTCCCAACCAACGTCTTAACAGTTCAACTCTTTCGCCTCCACGGCATGAAACTGCTGCCTCTTC CAAGCGTGCTACTGTTTTCTTAAAACTTTTGTAGTCcatgttttcttttccttctgttcattat atgttgactggagctgccaggtatcctcgaggaaattgatccaggtcttgactacattggcttc cacattac
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1191 Transcript exons: 3654319-3654449,3654540-3654647,3655386-3655451,3655959- 3656025,3656511-3656587,3656969-3657079,3657758-3657870, 3658228-3658301,3658611-3658707,3659723-3659775,3659930- 3660025,3660163-3660360 CATGTTTTCTTTTCCTTCTGTTCATTATATGTTGACTGGAGCTGCCAGGTATCCTCGAGGAAAT TGATCCAGGTCTTGACTACATTGGCTTCCACATTACATGACGCGATAGATTTTGAGAGGTCGTC CTCCTTTGTTTTTAATTTAAATATAATTTGATTGTTTGCTTCATCAAATTGGTCCCTCTCTTCC CTGGTTTTCTTGAGGCGTCCAGCAGCAGCATTTAGTGATATATTGACCTTTTTCAGCTGAGCCT CAAGTTCATCTCTCTGCTTCTCCAATTCAGCAATCTCATCAAGCACCTCCTTCTCAACTGTGCT CACTTCATTCTCCTTCTTAACACGGAAGTTCAGAGCATCTTCTTTCTGGCGCCTGTTCTCCAAA ATACGCTGCTCTGCCTTGGAGGATGAATTCGCAAGGGAATCTGCCAAGATCTTTAATTTATCAA TCTTCTGAGAATGGATCTCCAGAGAGTCTCCAGGTGATATTGACTTCTTCTTCAGTACAAGTTC TTCCACTCTAGAGCACAAACGGACTTCAATAAGTGCTTCTTTTAAACCCTCAATGTTTTCAACA GAAATATTCCCTGACGATTTATCTTGATCTTCAGTTATCTGGGCTCGTGATTTCTCCTTCTCAT CTAGCTTTTTCCACAACTCGAGGGTTTCAGCATCTCATAATGTCAGCATTCCTCTTTAGCCCTG AAATGACACTCTGAGTATATTCAAGTAGCTCTTCACGCTTCACCAGGACTTCATCTTTGTAATT TGAAAGCGCCTTGGCCAAGTCTTGTACAGTGTCCATGATTTTCTTGTTGACTTCTTTCCCTCCA GTAAGACACAGCCCAAAAATTTCCAAAAGAAGAGAAACTTCTTCCTCAGAAGGAGCTTCAAGAA CCATGGACAGTGTAATCCCCTCCAGTGCTTGACTGTATAGGAATACATCACGGAAGTTCATAGG CCCTCCTTCAATGTCAGCATCATAAAACAAAGCCAATGGTGCTTTTGAAATATCTGTTTCACTA GAAGGATCACGATCTTCTGGATCCTTCAAATCTGATCCGCTAAGTTCAGCCTCTATGTCTTGTA ACGCTCCCAACCAACGTCTTAACAGTTCAACTCTTTCGCCTCCACGGCATGAAACTGCTGCCTC TTCCAAGCGTGCTACTGTTTTCTTAAAACTTTTGTAGTC Transcript length: 1196 Transcript exons: 3654319-3654449,3654540-3654647,3655386-3655451,3655959- 3656025,3656511-3656587,3656969-3657079,3657758-3657875, 3658228-3658301,3658611-3658707,3659723-3659775,3659930- 3660025,3660163-3660360 CATGTTTTCTTTTCCTTCTGTTCATTATATGTTGACTGGAGCTGCCAGGTATCCTCGAGGAAAT TGATCCAGGTCTTGACTACATTGGCTTCCACATTACATGACGCGATAGATTTTGAGAGGTCGTC CTCCTTTGTTTTTAATTTAAATATAATTTGATTGTTTGCTTCATCAAATTGGTCCCTCTCTTCC CTGGTTTTCTTGAGGCGTCCAGCAGCAGCATTTAGTGATATATTGACCTTTTTCAGCTGAGCCT CAAGTTCATCTCTCTGCTTCTCCAATTCAGCAATCTCATCAAGCACCTCCTTCTCAACTGTGCT CACTTCATTCTCCTTCTTAACACGGAAGTTCAGAGCATCTTCTTTCTGGCGCCTGTTCTCCAAA ATACGCTGCTCTGCCTTGGAGGATGAATTCGCAAGGGAATCTGCCAAGATCTTTAATTTATCAA TCTTCTGAGAATGGATCTCCAGAGAGTCTCCAGGTGATATTGACTTCTTCTTCAGTACAAGTTC TTCCACTCTAGAGCACAAACGGACTTCAATAAGTGCTTCTTTTAAACCCTCAATGTTTTCAACA GAAATATTCCCTGACGATTTATCTTGATCTTCAGTTATCTGGGCTCGTGATTTCTCCTTCTCAT CTAGCTTTTTCCACAACTCGAGGGTTTCAGCATCTATCCTCATAATGTCAGCATTCCTCTTTAG CCCTGAAATGACACTCTGAGTATATTCAAGTAGCTCTTCACGCTTCACCAGGACTTCATCTTTG TAATTTGAAAGCGCCTTGGCCAAGTCTTGTACAGTGTCCATGATTTTCTTGTTGACTTCTTTCC CTCCAGTAAGACACAGCCCAAAAATTTCCAAAAGAAGAGAAACTTCTTCCTCAGAAGGAGCTTC AAGAACCATGGACAGTGTAATCCCCTCCAGTGCTTGACTGTATAGGAATACATCACGGAAGTTC ATAGGCCCTCCTTCAATGTCAGCATCATAAAACAAAGCCAATGGTGCTTTTGAAATATCTGTTT CACTAGAAGGATCACGATCTTCTGGATCCTTCAAATCTGATCCGCTAAGTTCAGCCTCTATGTC TTGTAACGCTCCCAACCAACGTCTTAACAGTTCAACTCTTTCGCCTCCACGGCATGAAACTGCT GCCTCTTCCAAGCGTGCTACTGTTTTCTTAAAACTTTTGTAGTC
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.227502692

Conservation Information
Conserved circRNAs	NA
PMCS	0.227502692

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							3654323-3657866(-)
						
						Potential amino acid sequence
						
							MDYKSFKKTVARLEEAAVSCRGGERVELLRRWLGALQDIEAELSGSDLKDPEDRDPSSETDISK
APLALFYDADIEGGPMNFRDVFLYSQALEGITLSMVLEAPSEEEVSLLLEIFGLCLTGGKEVNK
KIMDTVQDLAKALSNYKDEVLVKREELLEYTQSVISGLKRNADIMRC*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	3654323-3657866(-)
Potential amino acid sequence	MDYKSFKKTVARLEEAAVSCRGGERVELLRRWLGALQDIEAELSGSDLKDPEDRDPSSETDISK APLALFYDADIEGGPMNFRDVFLYSQALEGITLSMVLEAPSEEEVSLLLEIFGLCLTGGKEVNK KIMDTVQDLAKALSNYKDEVLVKREELLEYTQSVISGLKRNADIMRC*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0162350_circ_g.6

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