Detail information of Os05g0162350_circ_g.10


General Information
CircRNA Name Os05g0162350_circ_g.10
ID in PlantcircBase osa_circ_026759
Alias NA
Organism Oryza sativa
Position chr5: 3655959-3660360  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os05g0162350
Parent gene annotation Hypothetical protein. (Os05t0162350-00)
Parent gene strand +
Alternative splicing Os05g0162350_circ_g.1 Os05g0162350_circ_g.2 Os05g0162350_circ_g.3 Os05g0162350_circ_g.4 Os05g0162350_circ_g.5 Os05g0162350_circ_g.6 Os05g0162350_circ_g.7 Os05g0162350_circ_g.8 Os05g0162350_circ_g.9 Os05g0162350_circ_g.11 Os05g0162350_circ_g.12 Os05g0162350_circ_g.13
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0162200-02:9
Os05t0162200-01:9
Os05t0162350-00:8
Os05t0162200-02:9
Os05t0162200-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCCAACCAACGTCTTAACAGTTCAACTCTTTCGCCTCCACGGCATGAAACTGCTGCCTCTTC
CAAGCGTGCTACTGTTTTCTTAAAACTTTTGTAGTCcttctcaactgtgctcacttcattctcc
ttcttaacacggaagttcagagcatcttctttctggcgcctggtataaaagccaaattaaaatc
tcacctat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCAACTGTGCTCACTTCATTCTCCTTCTTAACACGGAAGTTCAGAGCATCTTCTTTCTGG
CGCCTGGTATAAAAGCCAAATTAAAATCTCACCTATATTTGCTGGTAATACGATTTGAAACATA
CAAAGAAAATGAGTCTAGAAAATTAATATGCCAAAAGAAAAGGAAGCAACACAAAGATAAAACT
TCCTGACAGTGAAAACAAAATGGAACATAGAACTTAAATAATCAGTAAATCAATACATTGCTAG
TTAAGTACAACCCTACAACTATAATTTCTGAAGTGCCGGTTTTGACTATCAAATAATCAACTGT
TTAAATACCCCAGGAGTCGCTTGCAAAAAAACATGGCAGTTCAGAGCAAATTAGATATCAAGTA
TAAACTAAGTATTCAAAGAAAAAGAATGATATACACATCATTGAGCAAGGATTTTTCATGTAGA
ACTGGAGCAAAAATCTATATTACATACTATTGAGTGTTGACAAATGAGTTATGGATAATAGAAT
AACATCTTTCGTACAGGAAAAACAATTTCAGAAATAAAACCTGTTCTCCAAAATACGCTGCTCT
GCCTTGGAGGATGAATTCGCAAGGGAATCTGCCAAGATCTTTAATTTATCAATCTGCAAGATGC
TGTGACATTGTTACAATCCATACACCACATACTTGCAGGACAAGAGAAGTTATTGACATAATGA
CTTGAAGTAAAACTGTTGTGCTTACATGGTGACTACTGACTACCAAAAGATAAGCAGTACAGCG
TTTTGAGCCACACAAGTCCTACTTACTACAAACTTTCTCATAATTAAACTTCTATTGGTGTTTT
CTAAAAGCCTGCTGAATTGATCCTGAAAAGTAGAACCAGTATAACCAAGAAAAGCATATTGCCA
ACCTAGACTGCATTCTAATGGGTTACCAGATGAGCAATTTAAGGAATGTAAAGGATTGCATCTC
AACTTCAAAACTCAAAAACTTATAAAAAGAAGAGTAAGACATAAGCCTGCCTTCTGAGAATGGA
TCTCCAGAGAGTCTCCAGGTGATATTGACTTCTTCTTCAGTACAAGTTCTTCCACTCTAGAGCA
CAAACGGACTTCAATAAGTGCTTCTTTTAAACCCTGGCAGACATGCAAGTATCTTCTTTAAGAA
CCTTGAAAACAACATACTAGAACAGACAAAACAGATTAACAAGCACTTGAAAGTAGTAAATAGA
TGCACAATACATGTAAAGTAATGGAGGAAATAGTACAAATGTTCATAATCACATCGAATTATTT
CTAGGACTTTTCTGGTGACTATGTTGCCAGATTGGAATGCATTCATTTAAAAAATTATGTGATG
TTTTAGAACATGTGTGGTCAACACTCAACATTTTCAAAGTTTCACTACCAATGGAGTTTATATA
AATTGATCTGAAATAAAGGCAATGTTTTTCTCATGATCTACATTTCATTTTGTTTAATGTTCCA
ACATATTTCTATTAAAAAAAATGATGAGTGGACACACATATGGGAGACCATGACAACATCCAAA
CCAATTACATGTTTGGATAGAGGGTGTATCATACAGCCAAAAAATCTATGGAGTCAAACTGAAC
TAGAGACTTCTGTGAAATATCTGCATTTGGAAAGTAAGCATTCAAAAAGCAAACAATTTCACCA
ATGCAAAATTAATTCCAAAGCCATATAGCATTGATCATTGAACTGCTTTGAACATTTAGCTACT
GAGCACTGTTCAATAAACTCTAACAAAAGAAACAAGAAAGTAAATCCATACTATATATAATTAG
GTAATACCTCAATGTTTTCAACAGAAATATTCCCTGACGATTTATCTTGATCTTCAGTTATCTG
GGCTCGTGATTTCTCCTTCTCATCTAGCTTTTTCCACAACTCGAGGGTTTCAGCATCTATCCTG
AAATCATGTACTAGCTTGAAATTAAGAAGCTAATATAGCGAGAAGCAAGCACCAAATGCCTCTT
TAAGAGTATTTGGAAGCCTTGGTTTCATAAGAATTGCAAGGAAAAAAAATTCTAATATTGATAC
ACAATATTCTAAATTTTCAAAGTTCGGTGAAAACTTTCATTTGTTACATGAGGTGTGAGTTGTA
AGAGAGAGGAAAAGGGAACACAGTTTTCAGAGTTTTAAGCCACATGCACAAGCTAAAACCCTCA
TGATTGAAAACAATTTACAGATTGTAGGAGCAAAAGGTTAAAGAACACTTAACAAAAATGGTAT
ACGAGTCTCATAAGCGGGTCAATTATCACCTCATAATGTCAGCATTCCTCTTTAGCCCTGAAAT
GACACTCTGAGTATATTCAAGTAGCTCTTCACGCTTCACCTGTTGACACAGATACAATGCATCA
TTGGCCACATCTATCGTATAAAAGGTTGAACGTGTGTGCATCAGAATTCAGTTTTTCACTTCAA
ACATACATGAAATCTGCATCTTAGAAAATAATTGCAAAAATAAAAAATGGTAGGAAGTAAGCTT
TTTTTTTCCTTAAGAAAAGTTCTTGTCAGAAGTGAAGCTCCATTGACTAGTTAAAACCGATTAA
ACTACAATTTTCTAGGATACAATGAAACAATAAATAACTAGGCAAGAATTATGAACTTGGATGG
AGTAAATTAATCACAACCAGAAGCATACCAGGACTTCATCTTTGTAATTTGAAAGCGCCTTGGC
CAAGTCTTGTACAGTGTCCATGATTTTCTTGTTGACTTCTTTCCCTCCAGTAAGACACAGCCTG
TAGGAAACAAGATTAGCACCAATTGTAAATTACAAAAGATCCAGGTCAGAGAACAGAGGACAGA
GAAAGTCGAAGTAGCTGAAATTGTACATACACATACTGATGATGGGCAGAAAAATGTGCAATAG
ATTAATAATAATAAGTATTTTACATATAACAATTGAGTGCATATAATTGTTAATGGAAAGCTAA
CAACATGGCATAGGAAACCTAAGTTAAAGTTGAATGGTGAACCAAATAGCAAACTTAGATTGAA
TAAAGTAACAGATACAACTATCACTATGAATCTGTCAAATCCCTACTATTATAAAAATTGAAGA
CGTTTTTGCCGGTACTTTGGTACGTCATCCGTATATGAGTCGGTTTTTAAGTTCGTTCGCTTTT
GGAAATACAGATCTGTATCTGAGTCGGGTTTAAGTTCGTTCGCTTTTGGAAATACAGGAACAGT
CGTATAAGAAATCTCTTTAAAAAAAACTTAGCATGTAACTTGAGATGATCGGACTCCTAATTGC
AGCTCATGATTTTCTAGAAAAAATATATATCCAAGCGAATTCTCACAGTGAATTTCACCTTAAC
TAAACCATATAACAATAATAAAATTAAAATAGCCTTCACCCGTTGTAATGCACGGGCATTTTTT
CTAGTCCCTAATAAAATCACAGGGCAAAATAGAATCAATTCTAAGTTTTTTTTTCACCAAGACA
AATGTTAGATGGTTTATAGGATAATAGGAGAAAAATATATGTGGTATTATGCTATTATGGATGC
TGGAAAGGAATGCTTATCATGCTGACAACAAATAACATCATGGCTCTTTTTTGGAAAGGAAAAA
CATCATGGCTCTTGTATTGTTAAATCCAAAGTCTCTGAAGGAAGCAATAGTTCTGAATTACTGT
GTTCACAATAATATTAAAGAGAGAATTCTACAAGCTGGCAAAAGTCCATCAACATTAGAAAAAA
CAAAAGGAAAGAAAGAAAATATATTAGCAGGTGATCTTAAAAGCAGACTCACCCAAAAATTTCC
AAAAGAAGAGAAACTTCTTCCTCAGAAGGAGCTTCAAGAACCTGATTATAGAAAAGATTGGCAG
TGCATAGCATCAAACCAAGTATGACCAAATAATATCATTCTAAGAACTAAAGTACAAACTGGCT
GCAGGAAAAAAAAGGTCAACTGAAATAGATTATACATATCCAGGAAAGAACTGTTGCACCAACT
CACCATGGACAGTGTAATCCCCTCCAGTGCTTGACTGTATAGGAATACATCACGGAAGTTCATA
GGCCCTCCTTCAATGTCAGCATCATAAAACAAAGCCTGATCCCAACAGTTCAGTCTAAAATCAG
CATGAACCAAACAATCTCAAGGAGATAACTATAGAAGGCTTTTGAATTAATGCCATCTTAAAAT
GACTACATAAGAAAAAGAAATGAAAATGAGACATACAAACTTACCAATGGTGCTTTTGAAATAT
CTGTTTCACTAGAAGGATCACGATCTTCTGGATCCTTCAAATCTGATCCGCTAAGTTCAGCCTC
TATGTCTTGTAACGCTCCCAACCAACGTCTTAACAGTTCAACTCTTTCGCCTCCACGGCATGAA
ACTGCTGCCTCTTCCAAGCGTGCTACTGTTTTCTTAAAACTTTTGTAGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.096283998
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017