Detail information of Os03g0213300_circ_g.4


General Information
CircRNA Name Os03g0213300_circ_g.4
ID in PlantcircBase osa_circ_041274
Alias NA
Organism Oryza sativa
Position chr3: 5911364-5911565  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os03g0213300
Parent gene annotation Phosphopantetheine attachment site domain containing protein. (O
s03t0213300-01);Hypothetical conserved gene. (Os03t0213300-02)
Parent gene strand +
Alternative splicing Os03g0213300_circ_g.2 Os03g0213300_circ_g.3 Os03g0213300_circ_g.5
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0213300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGCAGAGAGTCTGGTAGCACCCAAAATGACTGGAAAAGCAAGGCCCCCCTTGTACAGGACAT
CAACAGTACCCCAAACGTCTTTAATAATGATGGGAGctgaaatgccaagaaataattcacactc
atctggtggacatgctacaccaccaagtgcacatggattttggatgtcccaacaaaacagtatt
gatcataa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 202
Transcript exons: 5911364-5911565
CTGAAATGCCAAGAAATAATTCACACTCATCTGGTGGACATGCTACACCACCAAGTGCACATGG
ATTTTGGATGTCCCAACAAAACAGTATTGATCATAATATCAGCAGAGAGTCTGGTAGCACCCAA
AATGACTGGAAAAGCAAGGCCCCCCTTGTACAGGACATCAACAGTACCCCAAACGTCTTTAATA
ATGATGGGAG

Genomic sequence CTGAAATGCCAAGAAATAATTCACACTCATCTGGTGGACATGCTACACCACCAAGTGCACATGG
ATTTTGGATGTCCCAACAAAACAGTATTGATCATAATATCAGCAGAGAGTCTGGTAGCACCCAA
AATGACTGGAAAAGCAAGGCCCCCCTTGTACAGGACATCAACAGTACCCCAAACGTCTTTAATA
ATGATGGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.083333333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study