Detail information of Os03g0213300_circ_g.5


General Information
CircRNA Name Os03g0213300_circ_g.5
ID in PlantcircBase osa_circ_018503
Alias NA
Organism Oryza sativa
Position chr3: 5914616-5914714  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene Os03g0213300
Parent gene annotation Phosphopantetheine attachment site domain containing protein. (O
s03t0213300-01);Hypothetical conserved gene. (Os03t0213300-02)
Parent gene strand +
Alternative splicing Os03g0213300_circ_g.2 Os03g0213300_circ_g.3 Os03g0213300_circ_g.4
Support reads 2
Tissues pistil
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0213300-01:1
Os03t0213300-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTTCAATTTGCAGAAGACACCTGTTCCGCCATATAATGTCCAAAAACcttcttggtttgagc
gctatggaaaccacagaaatggtcagaatctttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTTGGTTTGAGCGCTATGGAAACCACAGAAATGGTCAGAATCTTTCCATGTTCAATTTGCA
GAAGACACCTGTTCCGCCATATAATGTCCAAAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.325252525
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017