Detail information of Os03g0213300_circ_g.3


General Information
CircRNA Name Os03g0213300_circ_g.3
ID in PlantcircBase osa_circ_018502
Alias Os_ciR9109
Organism Oryza sativa
Position chr3: 5909753-5914925  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0213300
Parent gene annotation Phosphopantetheine attachment site domain containing protein. (O
s03t0213300-01);Hypothetical conserved gene. (Os03t0213300-02)
Parent gene strand +
Alternative splicing Os03g0213300_circ_g.2 Os03g0213300_circ_g.4 Os03g0213300_circ_g.5
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0213300-02:1
Os03t0213300-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTATAATGCAAAGGAGGCCAAAGAAGCGCAAATCTGCAGAATCTGATCTTGTTTCTTGGCATAA
ACTCATTGAGCACCCCAAAACTTTGAGAAACATGAGgctacggaaaaataagaggccggtttca
ggttgctttcagcttgaattctgctttattggttgagggttacccttccgtgttagctgtaata
tcagtggg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 4204
Transcript exons: 5909753-5912169,5912289-5912404,5913255-5914925
GCTACGGAAAAATAAGAGGCCGGTTTCAGGTTGCTTTCAGCTTGAATTCTGCTTTATTGGTTGA
GGGTTACCCTTCCGTGTTAGCTGTAATATCAGTGGGATCATCCTCATCATCCTGAACCTGACAG
ATCTAAGAGCTGCATGTAGTGTCGTTTGATATGAAACTTTGGGGTTTGCATATTGCCGACGCCT
TACGTTTTCACGTGCATTAGACCCACAGTAATACGTTGGGAATGTCACAGTTTCACCCTACTCA
GCATGGAGGTGATAGTGATTTTCAGGTGTGGCAACAACAGATGATGTACAAGCAATTGCAAGAG
TTTCAGAGACAGCAGCAGGTACAACAGCTTGATCATGGAGCCAGGATGCAACCCTCTTTTGGTC
AGTTTCAAGCTCCTGCAAAACCACTTCCAACTGATCAACTCTCGGCAATGACGAATGAAATGCC
AAACAATGAATCTACAGCTTATGCATGGTCACATCAACTACATGGTAGTAGTGACCCAGGGTTG
GCAAGCAATTCTCAAATGTTGAATCCTAGCAGTAACACAAATTGGGAGCAATATGGTGGTGCTC
CTGGTGTAGCCAATTTTGTAAACGGTTCAATGTTTTCAAACACTCCGATTCAGCCCATGAGACC
GATGGGATTAGCTGCACACCAAATGAACCCATCTTTATATCCAATAAATACTACCAGCAGAGAT
GGATCTGGAAATCAGCACTCTCAGTTCTTAGGGATCCCAACTGATCCACGGAATGCAATGGCAA
GGGCAGCAGCACATCAGTCCGAAAAGGCATCGATGCAATTTAGCTCTTTAATGAGTGAACAAGG
TCCATCCAGCTCTATGCAAAATTTCCTTGGGAAGGTAGGTGATAATATTAAGGTGGGCACCCCT
GTTCCAGTAAATCATCTACAACATGGTGTTCAACACCAAGATTTTCATGGTAGGCCAAACCAAG
TTGATTTTCAAGCAGGCCTGCGTGAAAAATCAACAATGCAGGTAGAGTCAGGAAATGGTGGTGC
TAGCCTTGATCCTACCGAGGAGAAGTTCCTATTTGGCAATGACGAGGATAGCAACTGGGGAGCT
CTGTTGAGGGGTGGCAACGATCATGGCAGTTCTATGGATAATGACAACTTTGGTGGAGCTCTGC
CATCTCTCCAGAGTGGGAGCTGGAGCGCCCTTATGCAGGAAGCACTACAGTCTACAACCAGTGA
CAACAGTCCCAAGGAAGAATGGAGCGGCTTGAGCTTCCAGAAACAAGAACAAATTATAGCCAAC
AATTCAACCTTGCAAAGTCATGACCAGAATAAATTTTCAGCATTGAGTGGTGCCAATCTAGAAA
ATCAACGGCCTTCATCAGCTTCTAGCTACGGTGATGGAACAATGCATAATCCAAATTTTGCTGG
TTTTCAGCATGCTGCAAGAACTCCTTATGAGCAAAGGGACAGAATGCAACATGATTCTTCTAAT
GCCACTGGTACCAATCATCAATCAACTGCAGGAGTCAATAATGGATATTTTCAGCAGAGCATGA
AACAAAAGCAATCTGATGATTACAGTAGACAAGAACAAATGAACGCATCAAATGGCATTTGGGC
ACACCAGAAACCTGAAATGCCAAGAAATAATTCACACTCATCTGGTGGACATGCTACACCACCA
AGTGCACATGGATTTTGGATGTCCCAACAAAACAGTATTGATCATAATATCAGCAGAGAGTCTG
GTAGCACCCAAAATGACTGGAAAAGCAAGGCCCCCCTTGTACAGGACATCAACAGTACCCCAAA
CGTCTTTAATAATGATGGGAGCTTTTGGAAGTCTAGTGGAGGCAATGCAAATTCAGTCCACAGG
CCTCAACAGATGAAGCCTGATATAAGCACCATGCAAATGCCAAATGACAGTTCGGACGGTAAAA
GCACTAGTGCGATGGGCTCAAACATGCCAACTTTAAATCAGGATCAGTATCAATCCATTATTGG
TCGAACTGGTGAACATGTTGGGCAAAACCATAATATGGGACGTAAGGGTCCAGAGATTACAGGA
TCACTAGGAAGAGGTGCAGAGCAAAAGTCAAATGACCACAACCAGGATTACCTAAATGTGCTCC
CTACTGAAAGGCAAGGGCATGGTTCAAATCATGGACAACATGTGAGCAGTGATTTTGCTACCAG
GAGGCATCCTTTCTTTGCTGGAAAAGAATCCCAAAATTTGGGTCAATCTGGTCAGCAAGCAATG
GGATCATACATGTTGCAGAATCATGCCATGGATAACTCAGGAATGAACATTAGGCATTCTTCAG
GCAATCCAGTGCCTAATCAGTTTCCATCTCAGTCGCATCAGTTGCATAATAACCTGAAACCTCG
ATTCATTCCTAGCTCCCAGGCTTCGAGTAATATGGCTTCAGTAAATGAGAAAATGCTGATGAGA
GAGGAGCAATTTAAATCTCGACATGTTCCAAATAGCTCCAGTTCACCACCCTTTGGAGGATCTG
ATGCTGGCCTGCCTCAAAATCGAGCAGTTCAAAACAGTCAACATATGCTTCAACTTCTGCATAA
GGTGGACAATTCAACAGATAGCAATGCTGCTGCTGATATGCCAAACAGTTCTCCTGATAATACT
GGTACTGTTCAGCAACAGCTTAATCAATCTTCTCTGCAAGGTTTTGGATTAAGACTCGCACCAC
CATCACAACGACAATTGACTCCAGGCCATGTATGGTCTACTCGTGCTGATGTTGATGGCAAGCA
ACCTGAGCACTCAACAAAGGGAGAAGATCAAACACAACCTTCCGCTGCTAGCCAGTCTTTGCCA
CCTGGGCATCCAAGTTCACAACCGACACCGTTTAACTCTTCAGAAATAGATAGTACTGGACAGC
AAACTGGGCAATTTCACCAGTTTGGTTCAGGCCAACAATACCCTGTCTCTGAGTCAAGATCTGG
TTCTGTAGCGATGCCTCAGCAAGGCAGTTCTGCAACAGTGTTCAAGAATGTATGGACAAACATA
TCAGCACAGCGTCTAGCCGGTGTGCAACCTAACAAAATTACACCCAATATTCTCCAGTCTATGA
TGTTTCCCAATAGCGCTGCAGATACCAACTTATGGGGCTCCCAAAAGGCAGATGATCAAGGACA
GAGAGCATCAACTCCATCTGATGTTGCCACAAGTTCTACCAATTCACAAAATCAAGAAACAAAG
CAAGGTGGGGACAGTGATGCAGGGTTAGCCTCTTCTGAGATGGTAAATCTTGATTCAACAGGAG
CTACTATGTCGAGAGAATCCATACAGAAGCATTCGTCAGACGGGAATTTTGCCATGCATGTTTC
ATCCTTGGCACGGTTGCACCAGCAGGGAATCATGAACCCTAAACAAGGGGAGAACCCTGCAGCG
AACTTTCAGGCTATGAAGACTTCTCAGAACACTGCTATTGGGTTACATGGAAGCCCGACACCGT
CAAACATTCAGCAGCAGAATTACTCTTTACTCCATCAAATGCAAGCCATGAGACACGTGGATGT
TGATCCGGCAAATATAGCTGGAAAGAAGCTTAAATCACCTGAAACAGGTTCTGATGCTTCACAG
GTTGACTGGAAATCTGGTCAGAGGTTTGCGCATGGAACCAATAACTCGGTCAGATCGTCTGTAG
ATAACATTGGCAATGCAAATGTCCCAGGGCCATTCCCTGCTGACATGAAGATGCTAAGCTTTGC
TCCAAGGAACAATGAAGATAGAGGTCCAAGCATACCTTCTCAATTCCCTTCAAGAGAACCTCCC
TCTCAGGGTATGGCAGTTGCAGCACAAACTGAGCAGCAAACTCAAGTTCAGCCAGCAAATGCAT
CATCAGATTTAATTGAAAGAAGTGAGAGGCCCAGGATAAACCCTCAAATGGCACCTTCTTGGTT
TGAGCGCTATGGAAACCACAGAAATGGTCAGAATCTTTCCATGTTCAATTTGCAGAAGACACCT
GTTCCGCCATATAATGTCCAAAAACCTTCTTGGAACATGGACAATAATTCTGCTGAGCAAAGAA
TCGATTCTGGCCAATCTGTTAAGCCTGGGCATTACATTTCATCGAAAAAGATGGAAGTTTCAGT
CCCTTCCAGTATAATGCAAAGGAGGCCAAAGAAGCGCAAATCTGCAGAATCTGATCTTGTTTCT
TGGCATAAACTCATTGAGCACCCCAAAACTTTGAGAAACATGAG

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.149330869
Functional Information
Coding potential Y
Potential coding position 5909987-5909813(+)
Potential amino acid sequence MSQFHPTQHGGDSDFQVWQQQMMYKQLQEFQRQQQVQQLDHGARMQPSFGQFQAPAKPLPTDQL
SAMTNEMPNNESTAYAWSHQLHGSSDPGLASNSQMLNPSSNTNWEQYGGAPGVANFVNGSMFSN
TPIQPMRPMGLAAHQMNPSLYPINTTSRDGSGNQHSQFLGIPTDPRNAMARAAAHQSEKASMQF
SSLMSEQGPSSSMQNFLGKVGDNIKVGTPVPVNHLQHGVQHQDFHGRPNQVDFQAGLREKSTMQ
VESGNGGASLDPTEEKFLFGNDEDSNWGALLRGGNDHGSSMDNDNFGGALPSLQSGSWSALMQE
ALQSTTSDNSPKEEWSGLSFQKQEQIIANNSTLQSHDQNKFSALSGANLENQRPSSASSYGDGT
MHNPNFAGFQHAARTPYEQRDRMQHDSSNATGTNHQSTAGVNNGYFQQSMKQKQSDDYSRQEQM
NASNGIWAHQKPEMPRNNSHSSGGHATPPSAHGFWMSQQNSIDHNISRESGSTQNDWKSKAPLV
QDINSTPNVFNNDGSFWKSSGGNANSVHRPQQMKPDISTMQMPNDSSDGKSTSAMGSNMPTLNQ
DQYQSIIGRTGEHVGQNHNMGRKGPEITGSLGRGAEQKSNDHNQDYLNVLPTERQGHGSNHGQH
VSSDFATRRHPFFAGKESQNLGQSGQQAMGSYMLQNHAMDNSGMNIRHSSGNPVPNQFPSQSHQ
LHNNLKPRFIPSSQASSNMASVNEKMLMREEQFKSRHVPNSSSSPPFGGSDAGLPQNRAVQNSQ
HMLQLLHKVDNSTDSNAAADMPNSSPDNTGTVQQQLNQSSLQGFGLRLAPPSQRQLTPGHVWST
RADVDGKQPEHSTKGEDQTQPSAASQSLPPGHPSSQPTPFNSSEIDSTGQQTGQFHQFGSGQQY
PVSESRSGSVAMPQQGSSATVFKNVWTNISAQRLAGVQPNKITPNILQSMMFPNSAADTNLWGS
QKADDQGQRASTPSDVATSSTNSQNQETKQGGDSDAGLASSEMVNLDSTGATMSRESIQKHSSD
GNFAMHVSSLARLHQQGIMNPKQGENPAANFQAMKTSQNTAIGLHGSPTPSNIQQQNYSLLHQM
QAMRHVDVDPANIAGKKLKSPETGSDASQVDWKSGQRFAHGTNNSVRSSVDNIGNANVPGPFPA
DMKMLSFAPRNNEDRGPSIPSQFPSREPPSQGMAVAAQTEQQTQVQPANASSDLIERSERPRIN
PQMAPSWFERYGNHRNGQNLSMFNLQKTPVPPYNVQKPSWNMDNNSAEQRIDSGQSVKPGHYIS
SKKMEVSVPSSIMQRRPKKRKSAESDLVSWHKLIEHPKTLRNMRLRKNKRPVSGCFQLEFCFIG
*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017