Detail information of Os04g0442000_circ_g.6


General Information
CircRNA Name Os04g0442000_circ_g.6
ID in PlantcircBase osa_circ_023937
Alias NA
Organism Oryza sativa
Position chr4: 22008509-22009859  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0442000
Parent gene annotation Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-
BP). (Os04t0442000-01)
Parent gene strand +
Alternative splicing Os04g0442000_circ_g.4 Os04g0442000_circ_g.5 Os04g0442000_circ_g.7 Os04g0442000_circ_g.8 Os04g0442000_circ_g.9 Os04g0442000_circ_g.10 Os04g0442000_circ_g.11
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0442000-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCTGTTTCACAGGTTTAGTGGAACAATTATTGGTATTGGGAGTGTGCCAGCAATGTCAAAA
TCTCCATGGGCAGATTCTGACTGGAAATCTCTGAAGgacatgtctcagaatccaccatgtcaag
aactggttgccaaagatctccatggaactgagtggcatttccgtcacatctttcgtggttagct
tgaatctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACATGTCTCAGAATCCACCATGTCAAGAACTGGTTGCCAAAGATCTCCATGGAACTGAGTGGC
ATTTCCGTCACATCTTTCGTGGTTAGCTTGAATCTTATCATTCGGGTGTTCTGTTATGCTTTCA
ATAAAAGCAGGGCCAGCCATGTGTGGTCTAAAAAAAATCTCATCATTTGGCATGATTCTTCCAA
TCTTGTTGGCACTATGTTGTCCTTATTATTTTGGTGTAACACTTTATTTCTCAGCCACACATGC
TCACCATTGTGTAGTAGCATGTGGAATATATAAGCTGTATATCACTTTCAGGATCGCAATCTCA
TATCTTTCCATTTTTTTTTACAGGACAACCTAGGAGGCATCTGCTTACAACCGGTTGGAGTGTC
TTTGTTAGCTCAAAAAGATTGGTTGCTGGCGATGCATTTATCTTCCTGAGGTACACAATACTAA
GCATGTAACTTGAAGGCATTAGGTGCACTTGCATCTATCTCATGACTCAATTTAGTTGCGGATG
AATCTAGTCTACAGTTATTACTGGTTTCTTCCGCTAAATATCGTTGAATAACTTTCAGGGGCGA
AAGTGGTGAGCTACGGGTTGGAGTAAGGAGACTTATGAGACAAGTAAATAACATGCCATCATCT
GTCATATCAAGCCACAGCATGCATCTTGGAGTCCTTGCAACAGCTTCCCATGCTATCTCCACTG
GAACCCTCTTTTCTGTTTTCTACAAACCCAGGTTCAATAAATTCTCATTTTGGTTATGCCCTTT
GTTTCTGGTTCTTTATTGTATTGAGTTATGGTGCAAATTTTAATAGTAATGGTTGACGTTTAGA
CCTATATAAAACTGAATTACTGAAATATGGCATTATTGGAATATTGTTTACTCTGCTGAGTGTA
TGATCATTATAAAAATAAACTTATGTATGATGATTTACCCATCCAGTCATGCATTGTTTTTGAT
AAAGTGGAGTAATACTTGGGTTATCCTAATTAGCATTATGATGTGCAAGTTTACATTATCTTGC
AGACTAAACTTAATGTACATCTATTATGTTCCCAGAACAAGCCGGTCTGAGTTTGTTGTGAGCG
TTAACAAGTACCTTGAAGCTAAGAAGCAGAACTTGTCTGTTGGAATGAGGTTTAAGATGAGATT
TGAAGGTGATGAAGCTCCTGAAAGAAGGTACAATCTTGAGTTTCTTTCTGCATAATTATGCTAG
CTTTACTCCTGTAGTTTACGGTGCATATCATAAACATTTCTGTTTCACAGGTTTAGTGGAACAA
TTATTGGTATTGGGAGTGTGCCAGCAATGTCAAAATCTCCATGGGCAGATTCTGACTGGAAATC
TCTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.159344862
Functional Information
Coding potential Y
Potential coding position 22008513-22009856(+)
22008870-22009820(-)
22008515-22009234(-)
22008532-22009791(-)
Potential amino acid sequence MSQNPPCQELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGESGEL
RVGVRRLMRQVNNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLE
AKKQNLSVGMRFKMRFEGDEAPERRFSGTIIGIGSVPAMSKSPWADSDWKSLKDMSQNPPCQEL
VAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGESGELRVGVRRLMRQ
VNNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKKQNLSVGM
RFKMRFEGDEAPERRFSGTIIGIGSVPAMSKSPWADSDWKSLKDMSQNPPCQELVAKDLHGTEW
HFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGESGELRVGVRRLMRQVNNMPSSVIS
SHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKKQNLSVGMRFKMRFEGDE
APERRFSGTIIGIGSVPAMSKSPWADSDWKSLKDMSQNPPCQELVAKDLHGTEWHFRHIFRGQP
RRHLLTTGWSVFVSSKRLVAGDAFIFLRGESGELRVGVRRLMRQVNNMPSSVISSHSMHLGVLA
TASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKKQNLSVGMRFKMRFEGDEAPERRFSGTI
IGIGSVPAMSKSPWADSDWKSLK(+)
MPPRLSTKDVTEMPLSSMEIFGNQFLTWWILRHVLQRFPVRICPWRF*(-)
MSFRDFQSESAHGDFDIAGTLPIPIIVPLNLLSGASSPSNLILNLIPTDKFCFLASRYLLTLTT
NSDRLVLGL*(-)
MVDSETCPSEISSQNLPMEILTLLAHSQYQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017