Detail information of Os01g0310800_circ_g.1


General Information
CircRNA Name Os01g0310800_circ_g.1
ID in PlantcircBase osa_circ_001505
Alias Os_ciR5708
Organism Oryza sativa
Position chr1: 11678076-11678339  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os01g0310800
Parent gene annotation Similar to Pto kinase interactor 1. (Os01t0310800-01)
Parent gene strand +
Alternative splicing Os01g0310500_circ_g.1 Os01g0310500_circ_ag.1 EPlOSAG00000025527_circ_ig.1 Os01g0310800_circ_g.2 Os01g0310800_circ_g.3 Os01g0310800_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os01t0310800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCCAGAAGTATCACAAAAATGTCGCTAATGTTGCTGGCTTTCATTTAGGGGAATACATTTCA
GAGTGCGTGTATGAATCTTGCTGTGAATTATCCCAGgaaattaagcatatgacaagaaactaca
gcatgacctttagggaagaattccatgaacgtctatacaatggagttcttggcatggttcatgc
agttatag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAATTAAGCATATGACAAGAAACTACAGCATGACCTTTAGGGAAGAATTCCATGAACGTCTAT
ACAATGGAGTTCTTGGCATGGTTCATGCAGTTATAGTAAAACAAGTGAGTACATCTTCAAAAAC
CGACCGAGAAGTGTTTCTGAAGACTATGGGCATACTATGCCAGAAGTATCACAAAAATGTCGCT
AATGTTGCTGGCTTTCATTTAGGGGAATACATTTCAGAGTGCGTGTATGAATCTTGCTGTGAAT
TATCCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.10290404
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015