Detail information of Os11g0524300_circ_g.1


General Information
CircRNA Name Os11g0524300_circ_g.1
ID in PlantcircBase osa_circ_009450
Alias NA
Organism Oryza sativa
Position chr11: 18982381-18985522  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0524300
Parent gene annotation Protein of unknown function DUF1001 family protein. (Os11t052430
0-01)
Parent gene strand +
Alternative splicing Os11g0524300_circ_g.2 Os11g0524300_circ_g.3 Os11g0524300_circ_g.4
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0524051-00:2
Os11t0524300-01:5
Os11t0524051-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGATAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCA
AAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGttctcgagggagcaggcgaggaaggatc
ctgataactactttaatttgaggtgaggaattgtgcgagcattaccctttttttttgtatgtta
ttagcatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCTCGAGGGAGCAGGCGAGGAAGGATCCTGATAACTACTTTAATTTGAGGTGAGGAATTGTGC
GAGCATTACCCTTTTTTTTTGTATGTTATTAGCATTTGTGCTGTCGATTTGGTTGGGAATCCTT
GACTCCATACTTGTGTCACACTTGCTAATGGTAAGAACTAGTCTTACGTTGGGTTGTAGTGTTT
TGGGGCTGTTGGTTTGTTAGGAATTTGGTGAAAATAGCTTATTTCCCCCCTGCTTAGCAAGCTC
CATTGTTCTTGCATCGGTACAATGCACATCGCTGATATGCGATTGTGGTGTTGAGGAGTGAATA
TTGTAGGCTTTTGATTTTATCTTTGGTGATGATGATTGCCTGTGTTTTTGCGAGTAGATGAGCA
ATACTAAAATGACTGGCCATGTTAGAGCTTGGATATCATAATTTTTCTGATCACTGTTAAGTTT
TCGAATTGGATTATTTCTTCATTGGGTTCCACAATAAATGCGCATTGGGATCATCTGCTAGTAC
GAGCTCAGTATAAAACAGTTGATTGAGTGGCATGCTTATGCAAAGGGATGATTTAACTTTTGTA
CTTTCTGTCTTCTGTCCCCATAAATAAAATTGCGATTAAGGCACTATGTTTAGTCTTCTAGAAA
CAAATGGCAGTTGCAACTGTGATGCTGTACAAATAATTGACCTTATTATAAGCACCATGGACGG
TTCATTTGCTTTGGCAGAACTACGCAAACATATCAATGAAAATTTACTTGATTTCCTCCTACAG
TATCATCTGGAGCAAATTTATTATTAAAGATTTTTATTTCATTAAACCCTATATTTCTGATCCT
TTGGGAATAAATGAACAGGCAATGCTTTTTTTTTTTGTGAATTTCAAGGACCTACAACTCAGTG
ATGTAGTCAATTTTTATTTTACACTATATACTCTGAATACTTCTGCTCTTACTGATTTACCTTG
GTCCTTACTGTTGGTCCTTGGAACCGTAATTTCCAGGAGGATACCCGTATTATTGTGACACTTT
GGTTATCAATACATGGCTGCCTAGATATTTCGTATGGAAATGCAGCTTCTCTTAGTTGATAGTG
ATTCACCATTAGTTTGAAAAAAATCTAGATACCAGAATATAACATACTAGAGGCGATAAAACTT
CTTTTATTTTTGAATGTAAATTTTGTGCGCCTATGATACAGACTATTTCATTTACACATTCAGG
ATTATTTGTGCTTTCTTTCCTTATGGAACTCTTTTGAGTTATCAACTTGTTTCTTTTTGGGCAT
AAGGCCAAACATTTTGCAGTGTACATGCTAATCTGCTTTTGATCAGACATATATCTGGTGTTAT
AACCTGATCTTCCTTGCATCGTAGGATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCT
AGAGTGCTTTACTTTGAGCAAGTATGCCCACTATTTTCATGTCTTTATTTCACATTTCACAGTC
TAGTCCCTTTCTAAGACTTGGATATCTTTATGTTCCTTGCAGGCATTTTGGAGAAGTCCAGAAA
AACCTTTCCGACAAGTATGGTAACTTCTAATCTGTAGAGGTCATTCTTGCAAGCCTCTGTTTTT
TTAATTCAACATGTGAATGCATTTACTATTATATTATGTTCAACATTTTTAAAGTGCTTCTCTA
CAAATTGAAGTGCATCATGTGAAAACATGTATGGTTAACAAGCTTACAAGATCTGATGGTGCAC
ATCCACAAACATCATATTTTGTGCCATCTCATGTTAATTAATTGTCTGCTTTCCTATTCTTTGA
TCAAATGGTATTCCCCCATTTCACTGATTTGGTAGATGCTTAGAGCAGCCATATGACCATTTGT
CCACTTCATGCTTATGTTAAATCCAACTGTACAAACATTTTCATGTGTTTATTTCTTTTGTCTG
GAGTCTGGACACTTTAGGCTATGCTGTTATTGGAGATAGTGAGAAAAATGTCACATTACTCTGC
AAAAAGGATGCTTCTCATAAGATGTTCAATTGATTTGACATAACAATATGTGAATACTAGAACT
GAACATTTCATTTGCAGCAATGCTCTTTTATTTCCAATAAAAAAAACTTTAGGGGTTGGTCATG
GCAGTATCTGTTGATACTTAATATTGACAAGCAAAAATAAGAAAAGAATTTCTAACCCACACCA
TGGGATCTAGTCAAGAGATGCTATATAATCAACTAGACAACAAGGCTGTTTTGTGACAGATATT
GGTACTTTGCATGTCCTTTTGTGGCATATTATTTATATGATTTCACAACGAACTTTCATTTAAG
ATCTTGTCTTGTTCTTCTATGTTTCTATCCCATGTACCTTTCTGCTTTAGTATTTATATGCAAA
TGCTAATAAACTTATGGTCCATGCAGAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAA
ATGTGATGTTGAGGTGATCTTACCTGTGCCTTTATCTAAGATCTGATTGCATATATGCCTTTAC
GCTGATATTGAAGTTTTACATGGAGTAGTACTCTGCATTGATATTCCATAGAGTTAGGCTGTGT
TCTTCCCCCCATTTTCCCAACCCACCTCTCTCGTTTTCCGCGCACACAGTTTTCAAACTGCTAA
ACGGTGTGATTTATACAAAAACTTTCTATATAAAAATTGTTAAAAAAATCATATTAATCCATTT
TTTCAAAAAAAATTAGTTAATACTTAATTAATCATGCAATAAAATGAACTTCGTTTGCATGCCA
GGGAGGAGGGGTTCCCAACCCCCTCCTCCGAACACAGCCTTAGTAGAGTCAATTGGTTCATAAT
CCTCCAGTTTTGAATTTAAACTGCTGTATTACCAAAGCGAGGTCATAAGAAGAAATGATATATC
ATATTAAATCGTAAAAGAGGAATCTGATTCATGAATGTTAGTGTGGCATTGCATGATCTATTTT
CTACCTTTTCAGTTTTTCATATAAAATGCTGAAAACATATGTAACTTTCCTTACCTTGTCCATT
TTAAAGATTTTTATTAACACTAGATAATTTTCAATGGATAGTTGAGTTCATATGCAATTAGAGA
TGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTC
ATTGCG
Conservation Information
Conserved circRNAs osi_circ_009069
PMCS 0.212573879
Functional Information
Coding potential Y
Potential coding position 18983751-18985519(+)
18985441-18982426(+)
Potential amino acid sequence MLTCPATEMVDGSRVLYFEQAFWRSPEKPFRQRFYMVKPCPKDMKCDVELSSYAIRDVEEYKNF
CDRPKDQRPQPEEVIAFSREQARKDPDNYFNLRMLTCPATEMVDGSRVLYFEQAFWRSPEKPFR
QRFYMVKPCPKDMKCDVELSSYAIRDVEEYKNFCDRPKDQRPQPEEVIAFSREQARKDPDNYFN
LRMLTCPATEMVDGSRVLYFEQAFWRSPEKPFRQRFYMVKPCPKDMKCDVELSSYAIRDVEEYK
NFCDRPKDQRPQPEEVIAFSREQARKDPDNYFNLRMLTCPATEMVDGSRVLYFEQAFWRSPEKP
FRQRFYMVKPCPKDMKCDVELSSYAIRDVEEYKNFCDRPKDQRPQPEEVIA(+)
MQLEMLKSTRISVTVQRIRGHNQKKSLRSRGSRRGRILITTLI*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017