Detail information of Os11g0524300_circ_g.3


General Information
CircRNA Name Os11g0524300_circ_g.3
ID in PlantcircBase osa_circ_009452
Alias NA
Organism Oryza sativa
Position chr11: 18983749-18985522  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0524300
Parent gene annotation Protein of unknown function DUF1001 family protein. (Os11t052430
0-01)
Parent gene strand +
Alternative splicing Os11g0524300_circ_g.1 Os11g0524300_circ_g.2 Os11g0524300_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0524051-00:2
Os11t0524051-00:2
Os11t0524300-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGATAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCA
AAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGgatgcttacatgccctgcaacagagatg
gtggatggttctagagtgctttactttgagcaagtatgcccactattttcatgtctttatttca
catttcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCTAGAGTGCTTTACTTTGAGCAAGTA
TGCCCACTATTTTCATGTCTTTATTTCACATTTCACAGTCTAGTCCCTTTCTAAGACTTGGATA
TCTTTATGTTCCTTGCAGGCATTTTGGAGAAGTCCAGAAAAACCTTTCCGACAAGTATGGTAAC
TTCTAATCTGTAGAGGTCATTCTTGCAAGCCTCTGTTTTTTTAATTCAACATGTGAATGCATTT
ACTATTATATTATGTTCAACATTTTTAAAGTGCTTCTCTACAAATTGAAGTGCATCATGTGAAA
ACATGTATGGTTAACAAGCTTACAAGATCTGATGGTGCACATCCACAAACATCATATTTTGTGC
CATCTCATGTTAATTAATTGTCTGCTTTCCTATTCTTTGATCAAATGGTATTCCCCCATTTCAC
TGATTTGGTAGATGCTTAGAGCAGCCATATGACCATTTGTCCACTTCATGCTTATGTTAAATCC
AACTGTACAAACATTTTCATGTGTTTATTTCTTTTGTCTGGAGTCTGGACACTTTAGGCTATGC
TGTTATTGGAGATAGTGAGAAAAATGTCACATTACTCTGCAAAAAGGATGCTTCTCATAAGATG
TTCAATTGATTTGACATAACAATATGTGAATACTAGAACTGAACATTTCATTTGCAGCAATGCT
CTTTTATTTCCAATAAAAAAAACTTTAGGGGTTGGTCATGGCAGTATCTGTTGATACTTAATAT
TGACAAGCAAAAATAAGAAAAGAATTTCTAACCCACACCATGGGATCTAGTCAAGAGATGCTAT
ATAATCAACTAGACAACAAGGCTGTTTTGTGACAGATATTGGTACTTTGCATGTCCTTTTGTGG
CATATTATTTATATGATTTCACAACGAACTTTCATTTAAGATCTTGTCTTGTTCTTCTATGTTT
CTATCCCATGTACCTTTCTGCTTTAGTATTTATATGCAAATGCTAATAAACTTATGGTCCATGC
AGAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGGTGATCTTACC
TGTGCCTTTATCTAAGATCTGATTGCATATATGCCTTTACGCTGATATTGAAGTTTTACATGGA
GTAGTACTCTGCATTGATATTCCATAGAGTTAGGCTGTGTTCTTCCCCCCATTTTCCCAACCCA
CCTCTCTCGTTTTCCGCGCACACAGTTTTCAAACTGCTAAACGGTGTGATTTATACAAAAACTT
TCTATATAAAAATTGTTAAAAAAATCATATTAATCCATTTTTTCAAAAAAAATTAGTTAATACT
TAATTAATCATGCAATAAAATGAACTTCGTTTGCATGCCAGGGAGGAGGGGTTCCCAACCCCCT
CCTCCGAACACAGCCTTAGTAGAGTCAATTGGTTCATAATCCTCCAGTTTTGAATTTAAACTGC
TGTATTACCAAAGCGAGGTCATAAGAAGAAATGATATATCATATTAAATCGTAAAAGAGGAATC
TGATTCATGAATGTTAGTGTGGCATTGCATGATCTATTTTCTACCTTTTCAGTTTTTCATATAA
AATGCTGAAAACATATGTAACTTTCCTTACCTTGTCCATTTTAAAGATTTTTATTAACACTAGA
TAATTTTCAATGGATAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTG
TGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCG
Conservation Information
Conserved circRNAs NA
PMCS 0.116403824
Functional Information
Coding potential Y
Potential coding position 18983751-18983787(+)
18985441-18983787(+)
Potential amino acid sequence MLTCPATEMVDGSRVLYFEQAFWRSPEKPFRQRFYMVKPCPKDMKCDVELSSYAIRDVEEYKNF
CDRPKDQRPQPEEVIADAYMPCNRDGGWF*(+)
MQLEMLKSTRISVTVQRIRGHNQKKSLRMLTCPATEMVDGSRVLYFEQAFWRSPEKPFRQRFYM
VKPCPKDMKCDVELSSYAIRDVEEYKNFCDRPKDQRPQPEEVIADAYMPCNRDGGWF*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017