Detail information of Os11g0524300_circ_g.4


General Information
CircRNA Name Os11g0524300_circ_g.4
ID in PlantcircBase osa_circ_009453
Alias NA
Organism Oryza sativa
Position chr11: 18983931-18984175  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0524300
Parent gene annotation Protein of unknown function DUF1001 family protein. (Os11t052430
0-01)
Parent gene strand +
Alternative splicing Os11g0524300_circ_g.1 Os11g0524300_circ_g.2 Os11g0524300_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AA-AA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGTTAACAAGCTTACAAGATCTGATGGTGCACATCCACAAACATCATATTTTGTGCCATCTCA
TGTTAATTAATTGTCTGCTTTCCTATTCTTTGATCAgtatggtaacttctaatctgtagaggtc
attcttgcaagcctctgtttttttaattcaacatgtgaatgcatttactattatattatgttca
acattttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATGGTAACTTCTAATCTGTAGAGGTCATTCTTGCAAGCCTCTGTTTTTTTAATTCAACATGT
GAATGCATTTACTATTATATTATGTTCAACATTTTTAAAGTGCTTCTCTACAAATTGAAGTGCA
TCATGTGAAAACATGTATGGTTAACAAGCTTACAAGATCTGATGGTGCACATCCACAAACATCA
TATTTTGTGCCATCTCATGTTAATTAATTGTCTGCTTTCCTATTCTTTGATCA
Conservation Information
Conserved circRNAs NA
PMCS 0.148653061
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017