Plant Circular RNA Database

Detail information of Os07g0113700_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0113700_circ_g.1
					
						ID in PlantcircBase
						osa_circ_032630
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 754311-757242  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0113700						
					
						Parent gene annotation
						
							Tetratricopeptide-like helical domain containing protein. (Os07t
0113700-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0113700_circ_g.2 Os07g0113700_circ_g.3 Os07g0113700_circ_g.4 Os07g0113700_circ_g.5 Os07g0113700_circ_g.6 Os07g0113700_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0113700-01:8

General Information
CircRNA Name	Os07g0113700_circ_g.1
ID in PlantcircBase	osa_circ_032630
Alias	NA
Organism	Oryza sativa
Position	chr7: 754311-757242 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0113700
Parent gene annotation	Tetratricopeptide-like helical domain containing protein. (Os07t 0113700-01)
Parent gene strand	-
Alternative splicing	Os07g0113700_circ_g.2 Os07g0113700_circ_g.3 Os07g0113700_circ_g.4 Os07g0113700_circ_g.5 Os07g0113700_circ_g.6 Os07g0113700_circ_g.7
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0113700-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCTTGTTAAGGCGTCCACTTCTCAGTGAGATCCGTAACGGTGGTTGCCGATAGACCTTTTCAGC
CACATTTTTAGGATGCAGTCGTTTGCACCAATATTCcagtaatatgtcatacgcaatattgctg
ccttcacagcatcaagcatatcagggtcacgcgtcgggttcgtgtcactacaatatgcctcgca
aatggcct

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1016
Transcript exons: 754311-754408,754674-754764,754844-754882,755019-755110,
755535-755634,755742-755828,755949-756250,757036-757242
CAGTAATATGTCATACGCAATATTGCTGCCTTCACAGCATCAAGCATATCAGGGTCACGCGTCG
GGTTCGTGTCACTACAATATGCCTCGCAAATGGCCTCCCAAGCTGCAGACATTTCTTCATCATA
TTCCTCCCACCTTGATGGTGTACAAGGTGTTCGTATTGCAAAGTCGAATCCTGTCTTGCCCATG
TTTTGAGTGGTAATTCTTGTCCCTTCAAGACGCCTCCCCTGAAATGCAATGCTGTCGCATCTAG
TAGAGACCCAGTAGGTCTCACCAACTATATGGTACAACTCCGAGCACGACGATGCAACTTCTAT
CTTCTTCAACTTTTCAATATCTGTAAGGAAGATTGCACGATCCTCCGCATTATTGACATATTTC
AAGTCAAGCATGATATTCTTTGCAGCTTCCAAAACACTTTGGTAATATGGATAGTAACGAATTA
TTTTTGCTTGGCCTAGAAGCATCGGGGTATGAGAACCAAATCCAGAATTGAACTCTTCACTTAG
CTTATTGATCCAAACAACTGGGTCACAAGGTTCAGAAATTTGTCTCCATTTAACAGCAATATTA
TAGACATCATGCCAGGAGAGAGAAATTCCAGAGGAAATCCTGTCTTCATTTGGACTGGATGTTG
GTGATCCAGACAAAGTACTTGTGCTGCAATACCCTCCCCTGTTCTGGCACGCGTTAAGCTTATC
CCTTCTCCTAACTAACTTTGCATTGTTCTTTGGATTTCTCAGAAAGCGCCATGCTTTGGAAACT
TTCTGGGCAATCTCAATAGCAGCCAACCCAGCCATTCGGTACTGGCGTTGATTCGGCAAGAAGC
CACGACAATTATATTGTATCTTCTTCCCAATTGAATCTGCAGCTAGGATAAGAGTTGTCTGATG
CTTTGTGAATTTGAAGTCTTGCTTGTTAAGGCGTCCACTTCTCAGTGAGATCCGTAACGGTGGT
TGCCGATAGACCTTTTCAGCCACATTTTTAGGATGCAGTCGTTTGCACCAATATTC
						
					

						Genomic sequence
						
							CAGTAATATGTCATACGCAATATTGCTGCCTTCACAGCATCAAGCATATCAGGGTCACGCGTCG
GGTTCGTGTCACTACAATATGCCTCGCAAATGGCCTGCAGATCACAGAGCTATTAGTTTGTCTG
AAACTGTAAATATTACAGAAACCTAAACACAAGTTGTCTGCTGCAGCATCAACTCTTTCTATTG
CAACTCATGTGAAGTTCCAAGGCTCCCCATAATGTAATTCAACAGTGTACAACAATAAATTTAA
AAGCATGTCATGGTTTCTAAGCTCTTCCTTAGAGAACCTTCCCCGATACCGTGTAAACTCAAGA
GACCATAACCAACAAAGTTACAGTACAATAAATCTAACTGTACCTCCCAAGCTGCAGACATTTC
TTCATCATATTCCTCCCACCTTGATGGTGTACAAGGTGTTCGTATTGCAAAGTCGAATCCTGTC
TTGCCCCTGCGATGCCATCATGATACAAGTAAGCAGGAAAGCAGGAGGGTGTAGCAAAACAAAG
AGAACTGATTAAGCAACTTACATGTTTTGAGTGGTAATTCTTGTCCCTTCAAGACGCCTCCTGA
AAGAGCCCAAACTTTGTTATTAAATAAGCACAAGGGTAGTGCAACACTGTTTGTAAGTACTTTG
CTGCAGTTTCACATGGGAGAACAACAAACACATCCTAGTAAATATCCGAGCAAGTAAAAGGTAT
TTACCCCTGAAATGCAATGCTGTCGCATCTAGTAGAGACCCAGTAGGTCTCACCAACTATATGG
TACAACTCCGAGCACGACGATGCAACTTCTATCTGCAGGTTTAATTATCATGAGAAAATAACAC
ATTAAGCTTCATGCTATCTATTGGAAGAAGGAAAATGATGCAACAAAGAAAATATGCTAGAATC
AATCAAAGTGCTGTTGAACACAGAAATTCATCAAAATGAAGCCCATCCTTCACATCTGCTTGAT
ACCACTGCTTATGTAACTTATATTAGATATATGTAATGAGAAATACTAATATAGCATATTATAC
AAATGCTACATCACCCTGAATGCCCTTTTGGAAACTTTCCTCAACTCCAATGTGGAATGCTAGA
ACTTTCCCTTTGTTCCTCTTAGGGCTTGGAATTGTATTGTATAAACTTACTCTAGGTGCAAAAG
AAACATTGATATGTCATGACTCATGCATGAGCTATGACATTCAACAGCCTATTGTATAACTTAC
CAACTTACCTTCTTCAACTTTTCAATATCTGTAAGGAAGATTGCACGATCCTCCGCATTATTGA
CATATTTCAAGTCAAGCATGATATTCTTTGCAGCTTCCAAAACACTGCCATGTTATACAAAACA
AGTTAAGACCATTACTGACCCAGACCATTACTGACCCACTGCAAATTGCCACACGTCAAAGTAA
AAAGATAGTGGTCATTTCCTAACCTTTGGTAATATGGATAGTAACGAATTATTTTTGCTTGGCC
TAGAAGCATCGGGGTATGAGAACCAAATCCAGAATTGAACTCTTCACTGGTACCAGAAAAATTT
AAGCAAGAGAATGATTGACAAAATAAAATTTGTAAGCATGAGAATGATTGAAAAAATAAGAATG
ATTCAATAATTAATTCTTTTCACCAGAAATTAACTCACCTTAGCTTATTGATCCAAACAACTGG
GTCACAAGGTTCAGAAATTTGTCTCCATTTAACAGCAATATTATAGACATCATGCCAGGAGAGA
GAAATTCCAGAGGAAATCCTGTCTTCATTTGGACTGGATGTTGGTGATCCAGACAAAGTACTTG
TGCTGCAATACCCTCCCCTGTTCTGGCACGCGTTAAGCTTATCCCTTCTCCTAACTAACTTTGC
ATTGTTCTTTGGATTTCTCAGAAAGCGCCATGCTTTGGAAACTTTCTGGGCAATCTCAATAGCA
GCCAACCCAGCCATTCGGTACTACAAGAAAAAATATACTAGTATTAGATCACTAATCAGTAAAA
TGTACTTATAAAGCAAAATTATCGGAATCGGGATCATTTTGTTATTCATGATTCATGAAATGCG
TTTAGAAACTATATGACCAGATTAATCAGCTGAATCATGAATTAAAAAATGAGGCACGACGCTT
CGACTTAAACTGGAGAAGGGACAAATTATGACATAACAAGGCACAAACAAGGAGAACTGAAGTG
CATACCTACCCAACATCAAGACAGGATTTCTCACTAGCATGTACAGAAAGGCAAAAAGGAAATG
ACCATTCATCAAAACAATTTTATTCCTCAAAAGGAAAGAACCACCAAACTTAGGAGCATTAGTT
GGACTATTAAAAAATATTGGCATATTGCGATTTGTTCAAGTTCAAAAGGATCTTCTACATAGCT
TTAACACAATATATTTTATCTTTCAAACCAACCTTTAGGCACCAAAATAAGAAATTGATAAAAA
GAACATAGTAACATATAAGCCTTATTTACTCTTTTGGTGATATTCTCCACAAGAGTGTAATGCA
ATCAGACGGTGATAGAAAAATGAGATCATTCTACAGAAGTAGAGATGAACAAAGTGGATACAAA
TATAAGGACCAACATGTTTTGCCTTCATCAAATGTTTGATCCCATTCACACTTACGTCCCCCTT
AATTGTTATGAAACATCACACCAGTGATGTTGATCATTTTAACAAGGTAACTCAGATGATGAAA
AAGAAATACATAATCTGGAAAGCTCGGTGAGTGATACCTGGCGTTGATTCGGCAAGAAGCCACG
ACAATTATATTGTATCTTCTTCCCAATTGAATCTGCAGCTAGGATAAGAGTTGTCTGATGCTTT
GTGAATTTGAAGTCTTGCTTGTTAAGGCGTCCACTTCTCAGTGAGATCCGTAACGGTGGTTGCC
GATAGACCTTTTCAGCCACATTTTTAGGATGCAGTCGTTTGCACCAATATTC
						
					

			
		

Sequences
Splice junction sequence	GCTTGTTAAGGCGTCCACTTCTCAGTGAGATCCGTAACGGTGGTTGCCGATAGACCTTTTCAGC CACATTTTTAGGATGCAGTCGTTTGCACCAATATTCcagtaatatgtcatacgcaatattgctg ccttcacagcatcaagcatatcagggtcacgcgtcgggttcgtgtcactacaatatgcctcgca aatggcct
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1016 Transcript exons: 754311-754408,754674-754764,754844-754882,755019-755110, 755535-755634,755742-755828,755949-756250,757036-757242 CAGTAATATGTCATACGCAATATTGCTGCCTTCACAGCATCAAGCATATCAGGGTCACGCGTCG GGTTCGTGTCACTACAATATGCCTCGCAAATGGCCTCCCAAGCTGCAGACATTTCTTCATCATA TTCCTCCCACCTTGATGGTGTACAAGGTGTTCGTATTGCAAAGTCGAATCCTGTCTTGCCCATG TTTTGAGTGGTAATTCTTGTCCCTTCAAGACGCCTCCCCTGAAATGCAATGCTGTCGCATCTAG TAGAGACCCAGTAGGTCTCACCAACTATATGGTACAACTCCGAGCACGACGATGCAACTTCTAT CTTCTTCAACTTTTCAATATCTGTAAGGAAGATTGCACGATCCTCCGCATTATTGACATATTTC AAGTCAAGCATGATATTCTTTGCAGCTTCCAAAACACTTTGGTAATATGGATAGTAACGAATTA TTTTTGCTTGGCCTAGAAGCATCGGGGTATGAGAACCAAATCCAGAATTGAACTCTTCACTTAG CTTATTGATCCAAACAACTGGGTCACAAGGTTCAGAAATTTGTCTCCATTTAACAGCAATATTA TAGACATCATGCCAGGAGAGAGAAATTCCAGAGGAAATCCTGTCTTCATTTGGACTGGATGTTG GTGATCCAGACAAAGTACTTGTGCTGCAATACCCTCCCCTGTTCTGGCACGCGTTAAGCTTATC CCTTCTCCTAACTAACTTTGCATTGTTCTTTGGATTTCTCAGAAAGCGCCATGCTTTGGAAACT TTCTGGGCAATCTCAATAGCAGCCAACCCAGCCATTCGGTACTGGCGTTGATTCGGCAAGAAGC CACGACAATTATATTGTATCTTCTTCCCAATTGAATCTGCAGCTAGGATAAGAGTTGTCTGATG CTTTGTGAATTTGAAGTCTTGCTTGTTAAGGCGTCCACTTCTCAGTGAGATCCGTAACGGTGGT TGCCGATAGACCTTTTCAGCCACATTTTTAGGATGCAGTCGTTTGCACCAATATTC
Genomic sequence	CAGTAATATGTCATACGCAATATTGCTGCCTTCACAGCATCAAGCATATCAGGGTCACGCGTCG GGTTCGTGTCACTACAATATGCCTCGCAAATGGCCTGCAGATCACAGAGCTATTAGTTTGTCTG AAACTGTAAATATTACAGAAACCTAAACACAAGTTGTCTGCTGCAGCATCAACTCTTTCTATTG CAACTCATGTGAAGTTCCAAGGCTCCCCATAATGTAATTCAACAGTGTACAACAATAAATTTAA AAGCATGTCATGGTTTCTAAGCTCTTCCTTAGAGAACCTTCCCCGATACCGTGTAAACTCAAGA GACCATAACCAACAAAGTTACAGTACAATAAATCTAACTGTACCTCCCAAGCTGCAGACATTTC TTCATCATATTCCTCCCACCTTGATGGTGTACAAGGTGTTCGTATTGCAAAGTCGAATCCTGTC TTGCCCCTGCGATGCCATCATGATACAAGTAAGCAGGAAAGCAGGAGGGTGTAGCAAAACAAAG AGAACTGATTAAGCAACTTACATGTTTTGAGTGGTAATTCTTGTCCCTTCAAGACGCCTCCTGA AAGAGCCCAAACTTTGTTATTAAATAAGCACAAGGGTAGTGCAACACTGTTTGTAAGTACTTTG CTGCAGTTTCACATGGGAGAACAACAAACACATCCTAGTAAATATCCGAGCAAGTAAAAGGTAT TTACCCCTGAAATGCAATGCTGTCGCATCTAGTAGAGACCCAGTAGGTCTCACCAACTATATGG TACAACTCCGAGCACGACGATGCAACTTCTATCTGCAGGTTTAATTATCATGAGAAAATAACAC ATTAAGCTTCATGCTATCTATTGGAAGAAGGAAAATGATGCAACAAAGAAAATATGCTAGAATC AATCAAAGTGCTGTTGAACACAGAAATTCATCAAAATGAAGCCCATCCTTCACATCTGCTTGAT ACCACTGCTTATGTAACTTATATTAGATATATGTAATGAGAAATACTAATATAGCATATTATAC AAATGCTACATCACCCTGAATGCCCTTTTGGAAACTTTCCTCAACTCCAATGTGGAATGCTAGA ACTTTCCCTTTGTTCCTCTTAGGGCTTGGAATTGTATTGTATAAACTTACTCTAGGTGCAAAAG AAACATTGATATGTCATGACTCATGCATGAGCTATGACATTCAACAGCCTATTGTATAACTTAC CAACTTACCTTCTTCAACTTTTCAATATCTGTAAGGAAGATTGCACGATCCTCCGCATTATTGA CATATTTCAAGTCAAGCATGATATTCTTTGCAGCTTCCAAAACACTGCCATGTTATACAAAACA AGTTAAGACCATTACTGACCCAGACCATTACTGACCCACTGCAAATTGCCACACGTCAAAGTAA AAAGATAGTGGTCATTTCCTAACCTTTGGTAATATGGATAGTAACGAATTATTTTTGCTTGGCC TAGAAGCATCGGGGTATGAGAACCAAATCCAGAATTGAACTCTTCACTGGTACCAGAAAAATTT AAGCAAGAGAATGATTGACAAAATAAAATTTGTAAGCATGAGAATGATTGAAAAAATAAGAATG ATTCAATAATTAATTCTTTTCACCAGAAATTAACTCACCTTAGCTTATTGATCCAAACAACTGG GTCACAAGGTTCAGAAATTTGTCTCCATTTAACAGCAATATTATAGACATCATGCCAGGAGAGA GAAATTCCAGAGGAAATCCTGTCTTCATTTGGACTGGATGTTGGTGATCCAGACAAAGTACTTG TGCTGCAATACCCTCCCCTGTTCTGGCACGCGTTAAGCTTATCCCTTCTCCTAACTAACTTTGC ATTGTTCTTTGGATTTCTCAGAAAGCGCCATGCTTTGGAAACTTTCTGGGCAATCTCAATAGCA GCCAACCCAGCCATTCGGTACTACAAGAAAAAATATACTAGTATTAGATCACTAATCAGTAAAA TGTACTTATAAAGCAAAATTATCGGAATCGGGATCATTTTGTTATTCATGATTCATGAAATGCG TTTAGAAACTATATGACCAGATTAATCAGCTGAATCATGAATTAAAAAATGAGGCACGACGCTT CGACTTAAACTGGAGAAGGGACAAATTATGACATAACAAGGCACAAACAAGGAGAACTGAAGTG CATACCTACCCAACATCAAGACAGGATTTCTCACTAGCATGTACAGAAAGGCAAAAAGGAAATG ACCATTCATCAAAACAATTTTATTCCTCAAAAGGAAAGAACCACCAAACTTAGGAGCATTAGTT GGACTATTAAAAAATATTGGCATATTGCGATTTGTTCAAGTTCAAAAGGATCTTCTACATAGCT TTAACACAATATATTTTATCTTTCAAACCAACCTTTAGGCACCAAAATAAGAAATTGATAAAAA GAACATAGTAACATATAAGCCTTATTTACTCTTTTGGTGATATTCTCCACAAGAGTGTAATGCA ATCAGACGGTGATAGAAAAATGAGATCATTCTACAGAAGTAGAGATGAACAAAGTGGATACAAA TATAAGGACCAACATGTTTTGCCTTCATCAAATGTTTGATCCCATTCACACTTACGTCCCCCTT AATTGTTATGAAACATCACACCAGTGATGTTGATCATTTTAACAAGGTAACTCAGATGATGAAA AAGAAATACATAATCTGGAAAGCTCGGTGAGTGATACCTGGCGTTGATTCGGCAAGAAGCCACG ACAATTATATTGTATCTTCTTCCCAATTGAATCTGCAGCTAGGATAAGAGTTGTCTGATGCTTT GTGAATTTGAAGTCTTGCTTGTTAAGGCGTCCACTTCTCAGTGAGATCCGTAACGGTGGTTGCC GATAGACCTTTTCAGCCACATTTTTAGGATGCAGTCGTTTGCACCAATATTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.228955375

Conservation Information
Conserved circRNAs	NA
PMCS	0.228955375

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							756246-757166(-)
						
						Potential amino acid sequence
						
							MAGLAAIEIAQKVSKAWRFLRNPKNNAKLVRRRDKLNACQNRGGYCSTSTLSGSPTSSPNEDRI
SSGISLSWHDVYNIAVKWRQISEPCDPVVWINKLSEEFNSGFGSHTPMLLGQAKIIRYYPYYQS
VLEAAKNIMLDLKYVNNAEDRAIFLTDIEKLKKIEVASSCSELYHIVGETYWVSTRCDSIAFQG
RRLEGTRITTQNMGKTGFDFAIRTPCTPSRWEEYDEEMSAAWEAICEAYCSDTNPTRDPDMLDA
VKAAILRMTYYWNIGANDCILKMWLKRSIGNHRYGSH*(-)
						
						Sponge-miRNAs
						
							osa-miR319a-3p.2-3p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	756246-757166(-)
Potential amino acid sequence	MAGLAAIEIAQKVSKAWRFLRNPKNNAKLVRRRDKLNACQNRGGYCSTSTLSGSPTSSPNEDRI SSGISLSWHDVYNIAVKWRQISEPCDPVVWINKLSEEFNSGFGSHTPMLLGQAKIIRYYPYYQS VLEAAKNIMLDLKYVNNAEDRAIFLTDIEKLKKIEVASSCSELYHIVGETYWVSTRCDSIAFQG RRLEGTRITTQNMGKTGFDFAIRTPCTPSRWEEYDEEMSAAWEAICEAYCSDTNPTRDPDMLDA VKAAILRMTYYWNIGANDCILKMWLKRSIGNHRYGSH*(-)
Sponge-miRNAs	osa-miR319a-3p.2-3p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0113700_circ_g.1

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