Plant Circular RNA Database

Detail information of Os07g0113700_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os07g0113700_circ_g.2
					
						ID in PlantcircBase
						osa_circ_032631
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 755535-758365  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0113700						
					
						Parent gene annotation
						
							Tetratricopeptide-like helical domain containing protein. (Os07t
0113700-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0113700_circ_g.1 Os07g0113700_circ_g.3 Os07g0113700_circ_g.4 Os07g0113700_circ_g.5 Os07g0113700_circ_g.6 Os07g0113700_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0113700-01:7

General Information
CircRNA Name	Os07g0113700_circ_g.2
ID in PlantcircBase	osa_circ_032631
Alias	NA
Organism	Oryza sativa
Position	chr7: 755535-758365 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0113700
Parent gene annotation	Tetratricopeptide-like helical domain containing protein. (Os07t 0113700-01)
Parent gene strand	-
Alternative splicing	Os07g0113700_circ_g.1 Os07g0113700_circ_g.3 Os07g0113700_circ_g.4 Os07g0113700_circ_g.5 Os07g0113700_circ_g.6 Os07g0113700_circ_g.7
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0113700-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTACTCTCCAATCGCATGATGACAAGAGGCACGCAAGTATAGGCACTCTATATTTGAACTCTCA
TGTTTTAAAGCAACCGACAGATCTTTGATAGCACTCcttcttcaacttttcaatatctgtaagg
aagattgcacgatcctccgcattattgacatatttcaagtcaagcatgatattctttgcagctt
ccaaaaca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 973
Transcript exons: 755535-755634,755742-755828,755949-756250,757036-757242,
757319-757405,757978-758058,758257-758365
CTTCTTCAACTTTTCAATATCTGTAAGGAAGATTGCACGATCCTCCGCATTATTGACATATTTC
AAGTCAAGCATGATATTCTTTGCAGCTTCCAAAACACTTTGGTAATATGGATAGTAACGAATTA
TTTTTGCTTGGCCTAGAAGCATCGGGGTATGAGAACCAAATCCAGAATTGAACTCTTCACTTAG
CTTATTGATCCAAACAACTGGGTCACAAGGTTCAGAAATTTGTCTCCATTTAACAGCAATATTA
TAGACATCATGCCAGGAGAGAGAAATTCCAGAGGAAATCCTGTCTTCATTTGGACTGGATGTTG
GTGATCCAGACAAAGTACTTGTGCTGCAATACCCTCCCCTGTTCTGGCACGCGTTAAGCTTATC
CCTTCTCCTAACTAACTTTGCATTGTTCTTTGGATTTCTCAGAAAGCGCCATGCTTTGGAAACT
TTCTGGGCAATCTCAATAGCAGCCAACCCAGCCATTCGGTACTGGCGTTGATTCGGCAAGAAGC
CACGACAATTATATTGTATCTTCTTCCCAATTGAATCTGCAGCTAGGATAAGAGTTGTCTGATG
CTTTGTGAATTTGAAGTCTTGCTTGTTAAGGCGTCCACTTCTCAGTGAGATCCGTAACGGTGGT
TGCCGATAGACCTTTTCAGCCACATTTTTAGGATGCAGTCGTTTGCACCAATATTCCTTGAACA
GTGGGTCAACATCATCATCAATGTTAAACTGAGAGAACTCTAAATTGGCCTTTGAAGCAGTATA
CAGAGCGATTTCCTTCTGATAGAAGGCCAAACATTGTAGCACAAATTTATCCATGGAGTCAAGC
TCCAAGTCGAGGACATCATCATAATCTTTGATCGCGGCCTTGTACTCTCCAATCGCATGATGAC
AAGAGGCACGCAAGTATAGGCACTCTATATTTGAACTCTCATGTTTTAAAGCAACCGACAGATC
TTTGATAGCACTC
						
					

						Genomic sequence
						
							CTTCTTCAACTTTTCAATATCTGTAAGGAAGATTGCACGATCCTCCGCATTATTGACATATTTC
AAGTCAAGCATGATATTCTTTGCAGCTTCCAAAACACTGCCATGTTATACAAAACAAGTTAAGA
CCATTACTGACCCAGACCATTACTGACCCACTGCAAATTGCCACACGTCAAAGTAAAAAGATAG
TGGTCATTTCCTAACCTTTGGTAATATGGATAGTAACGAATTATTTTTGCTTGGCCTAGAAGCA
TCGGGGTATGAGAACCAAATCCAGAATTGAACTCTTCACTGGTACCAGAAAAATTTAAGCAAGA
GAATGATTGACAAAATAAAATTTGTAAGCATGAGAATGATTGAAAAAATAAGAATGATTCAATA
ATTAATTCTTTTCACCAGAAATTAACTCACCTTAGCTTATTGATCCAAACAACTGGGTCACAAG
GTTCAGAAATTTGTCTCCATTTAACAGCAATATTATAGACATCATGCCAGGAGAGAGAAATTCC
AGAGGAAATCCTGTCTTCATTTGGACTGGATGTTGGTGATCCAGACAAAGTACTTGTGCTGCAA
TACCCTCCCCTGTTCTGGCACGCGTTAAGCTTATCCCTTCTCCTAACTAACTTTGCATTGTTCT
TTGGATTTCTCAGAAAGCGCCATGCTTTGGAAACTTTCTGGGCAATCTCAATAGCAGCCAACCC
AGCCATTCGGTACTACAAGAAAAAATATACTAGTATTAGATCACTAATCAGTAAAATGTACTTA
TAAAGCAAAATTATCGGAATCGGGATCATTTTGTTATTCATGATTCATGAAATGCGTTTAGAAA
CTATATGACCAGATTAATCAGCTGAATCATGAATTAAAAAATGAGGCACGACGCTTCGACTTAA
ACTGGAGAAGGGACAAATTATGACATAACAAGGCACAAACAAGGAGAACTGAAGTGCATACCTA
CCCAACATCAAGACAGGATTTCTCACTAGCATGTACAGAAAGGCAAAAAGGAAATGACCATTCA
TCAAAACAATTTTATTCCTCAAAAGGAAAGAACCACCAAACTTAGGAGCATTAGTTGGACTATT
AAAAAATATTGGCATATTGCGATTTGTTCAAGTTCAAAAGGATCTTCTACATAGCTTTAACACA
ATATATTTTATCTTTCAAACCAACCTTTAGGCACCAAAATAAGAAATTGATAAAAAGAACATAG
TAACATATAAGCCTTATTTACTCTTTTGGTGATATTCTCCACAAGAGTGTAATGCAATCAGACG
GTGATAGAAAAATGAGATCATTCTACAGAAGTAGAGATGAACAAAGTGGATACAAATATAAGGA
CCAACATGTTTTGCCTTCATCAAATGTTTGATCCCATTCACACTTACGTCCCCCTTAATTGTTA
TGAAACATCACACCAGTGATGTTGATCATTTTAACAAGGTAACTCAGATGATGAAAAAGAAATA
CATAATCTGGAAAGCTCGGTGAGTGATACCTGGCGTTGATTCGGCAAGAAGCCACGACAATTAT
ATTGTATCTTCTTCCCAATTGAATCTGCAGCTAGGATAAGAGTTGTCTGATGCTTTGTGAATTT
GAAGTCTTGCTTGTTAAGGCGTCCACTTCTCAGTGAGATCCGTAACGGTGGTTGCCGATAGACC
TTTTCAGCCACATTTTTAGGATGCAGTCGTTTGCACCAATATTCCTATATTTCACATAAACCTT
TAGTTAGTGCATCACAAAGATCAAGGTTCTGCAATAGATTTTAGAGAAAACTCAACCTTGAACA
GTGGGTCAACATCATCATCAATGTTAAACTGAGAGAACTCTAAATTGGCCTTTGAAGCAGTATA
CAGAGCGATTTCCTTCTGCAAGGAATATCAGGCAAGAAAACCAGGGTTAGTAGCAAAAGAAACA
ATGACATGACCCCAGATATAGAACAGAAGATAATGTTAGTTAGTAGAGAACCCGGGAGTCCAAG
ACTCCAAGATAAAGAAGTGCTTGTGTTCAAATAAAGCTGCTTGATCTGAGGCAAACAGACAAAA
GTTTTGATTATGCATCATGCTAGTGCTAGTTGTTGCGAGAGAACAACAATAGTTATGTAAAGAA
AACTTTGGCCCCGTTTGCAAAATTATAAGATAACTTAACAATCACAGTAAGTTTTGGACTCGAT
GTGAGATTTGCATTCCTAATGAAATATAGGTATCTAATACTGTAGTTATAAGCTCGTTAATTAT
GGATAGCCTGTAGCTTTAAAAACTTTCTGTGGATTTCTAAGGCGAAAGAAAGGGTTGATACTCT
AGTCGTAGTGGGATGCAATGCCTATATTCCTTTTCATCTCCTCGAATGGATTTCAGATCTTTAG
ACCAGGGAATTCATGGTATTGGCATAAGGAACAAGCTCCATGGAAAAAGCAATTGAAAGGGAAT
AAATTATGTACCTGATAGAAGGCCAAACATTGTAGCACAAATTTATCCATGGAGTCAAGCTCCA
AGTCGAGGACATCATCATAATCTTTGATCTTCAAAGGAAAAAGGATTTTTTTTGTTAAAAAAGC
GCAAAATGTAGTAGTATATACTAGTATAGATGACAAAATAGACATAGATGCAGTCATGCAACTG
ATGGCAGAATGATAGCTTTAGAGCAGTCACAATCATTATCATCCCTAATAAAGTTTAAATTAGC
ATTTGCCGGTTCACTAAATTAAACAGTAACATACCGCGGCCTTGTACTCTCCAATCGCATGATG
ACAAGAGGCACGCAAGTATAGGCACTCTATATTTGAACTCTCATGTTTTAAAGCAACCGACAGA
TCTTTGATAGCACTC
						
					

			
		

Sequences
Splice junction sequence	GTACTCTCCAATCGCATGATGACAAGAGGCACGCAAGTATAGGCACTCTATATTTGAACTCTCA TGTTTTAAAGCAACCGACAGATCTTTGATAGCACTCcttcttcaacttttcaatatctgtaagg aagattgcacgatcctccgcattattgacatatttcaagtcaagcatgatattctttgcagctt ccaaaaca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 973 Transcript exons: 755535-755634,755742-755828,755949-756250,757036-757242, 757319-757405,757978-758058,758257-758365 CTTCTTCAACTTTTCAATATCTGTAAGGAAGATTGCACGATCCTCCGCATTATTGACATATTTC AAGTCAAGCATGATATTCTTTGCAGCTTCCAAAACACTTTGGTAATATGGATAGTAACGAATTA TTTTTGCTTGGCCTAGAAGCATCGGGGTATGAGAACCAAATCCAGAATTGAACTCTTCACTTAG CTTATTGATCCAAACAACTGGGTCACAAGGTTCAGAAATTTGTCTCCATTTAACAGCAATATTA TAGACATCATGCCAGGAGAGAGAAATTCCAGAGGAAATCCTGTCTTCATTTGGACTGGATGTTG GTGATCCAGACAAAGTACTTGTGCTGCAATACCCTCCCCTGTTCTGGCACGCGTTAAGCTTATC CCTTCTCCTAACTAACTTTGCATTGTTCTTTGGATTTCTCAGAAAGCGCCATGCTTTGGAAACT TTCTGGGCAATCTCAATAGCAGCCAACCCAGCCATTCGGTACTGGCGTTGATTCGGCAAGAAGC CACGACAATTATATTGTATCTTCTTCCCAATTGAATCTGCAGCTAGGATAAGAGTTGTCTGATG CTTTGTGAATTTGAAGTCTTGCTTGTTAAGGCGTCCACTTCTCAGTGAGATCCGTAACGGTGGT TGCCGATAGACCTTTTCAGCCACATTTTTAGGATGCAGTCGTTTGCACCAATATTCCTTGAACA GTGGGTCAACATCATCATCAATGTTAAACTGAGAGAACTCTAAATTGGCCTTTGAAGCAGTATA CAGAGCGATTTCCTTCTGATAGAAGGCCAAACATTGTAGCACAAATTTATCCATGGAGTCAAGC TCCAAGTCGAGGACATCATCATAATCTTTGATCGCGGCCTTGTACTCTCCAATCGCATGATGAC AAGAGGCACGCAAGTATAGGCACTCTATATTTGAACTCTCATGTTTTAAAGCAACCGACAGATC TTTGATAGCACTC
Genomic sequence	CTTCTTCAACTTTTCAATATCTGTAAGGAAGATTGCACGATCCTCCGCATTATTGACATATTTC AAGTCAAGCATGATATTCTTTGCAGCTTCCAAAACACTGCCATGTTATACAAAACAAGTTAAGA CCATTACTGACCCAGACCATTACTGACCCACTGCAAATTGCCACACGTCAAAGTAAAAAGATAG TGGTCATTTCCTAACCTTTGGTAATATGGATAGTAACGAATTATTTTTGCTTGGCCTAGAAGCA TCGGGGTATGAGAACCAAATCCAGAATTGAACTCTTCACTGGTACCAGAAAAATTTAAGCAAGA GAATGATTGACAAAATAAAATTTGTAAGCATGAGAATGATTGAAAAAATAAGAATGATTCAATA ATTAATTCTTTTCACCAGAAATTAACTCACCTTAGCTTATTGATCCAAACAACTGGGTCACAAG GTTCAGAAATTTGTCTCCATTTAACAGCAATATTATAGACATCATGCCAGGAGAGAGAAATTCC AGAGGAAATCCTGTCTTCATTTGGACTGGATGTTGGTGATCCAGACAAAGTACTTGTGCTGCAA TACCCTCCCCTGTTCTGGCACGCGTTAAGCTTATCCCTTCTCCTAACTAACTTTGCATTGTTCT TTGGATTTCTCAGAAAGCGCCATGCTTTGGAAACTTTCTGGGCAATCTCAATAGCAGCCAACCC AGCCATTCGGTACTACAAGAAAAAATATACTAGTATTAGATCACTAATCAGTAAAATGTACTTA TAAAGCAAAATTATCGGAATCGGGATCATTTTGTTATTCATGATTCATGAAATGCGTTTAGAAA CTATATGACCAGATTAATCAGCTGAATCATGAATTAAAAAATGAGGCACGACGCTTCGACTTAA ACTGGAGAAGGGACAAATTATGACATAACAAGGCACAAACAAGGAGAACTGAAGTGCATACCTA CCCAACATCAAGACAGGATTTCTCACTAGCATGTACAGAAAGGCAAAAAGGAAATGACCATTCA TCAAAACAATTTTATTCCTCAAAAGGAAAGAACCACCAAACTTAGGAGCATTAGTTGGACTATT AAAAAATATTGGCATATTGCGATTTGTTCAAGTTCAAAAGGATCTTCTACATAGCTTTAACACA ATATATTTTATCTTTCAAACCAACCTTTAGGCACCAAAATAAGAAATTGATAAAAAGAACATAG TAACATATAAGCCTTATTTACTCTTTTGGTGATATTCTCCACAAGAGTGTAATGCAATCAGACG GTGATAGAAAAATGAGATCATTCTACAGAAGTAGAGATGAACAAAGTGGATACAAATATAAGGA CCAACATGTTTTGCCTTCATCAAATGTTTGATCCCATTCACACTTACGTCCCCCTTAATTGTTA TGAAACATCACACCAGTGATGTTGATCATTTTAACAAGGTAACTCAGATGATGAAAAAGAAATA CATAATCTGGAAAGCTCGGTGAGTGATACCTGGCGTTGATTCGGCAAGAAGCCACGACAATTAT ATTGTATCTTCTTCCCAATTGAATCTGCAGCTAGGATAAGAGTTGTCTGATGCTTTGTGAATTT GAAGTCTTGCTTGTTAAGGCGTCCACTTCTCAGTGAGATCCGTAACGGTGGTTGCCGATAGACC TTTTCAGCCACATTTTTAGGATGCAGTCGTTTGCACCAATATTCCTATATTTCACATAAACCTT TAGTTAGTGCATCACAAAGATCAAGGTTCTGCAATAGATTTTAGAGAAAACTCAACCTTGAACA GTGGGTCAACATCATCATCAATGTTAAACTGAGAGAACTCTAAATTGGCCTTTGAAGCAGTATA CAGAGCGATTTCCTTCTGCAAGGAATATCAGGCAAGAAAACCAGGGTTAGTAGCAAAAGAAACA ATGACATGACCCCAGATATAGAACAGAAGATAATGTTAGTTAGTAGAGAACCCGGGAGTCCAAG ACTCCAAGATAAAGAAGTGCTTGTGTTCAAATAAAGCTGCTTGATCTGAGGCAAACAGACAAAA GTTTTGATTATGCATCATGCTAGTGCTAGTTGTTGCGAGAGAACAACAATAGTTATGTAAAGAA AACTTTGGCCCCGTTTGCAAAATTATAAGATAACTTAACAATCACAGTAAGTTTTGGACTCGAT GTGAGATTTGCATTCCTAATGAAATATAGGTATCTAATACTGTAGTTATAAGCTCGTTAATTAT GGATAGCCTGTAGCTTTAAAAACTTTCTGTGGATTTCTAAGGCGAAAGAAAGGGTTGATACTCT AGTCGTAGTGGGATGCAATGCCTATATTCCTTTTCATCTCCTCGAATGGATTTCAGATCTTTAG ACCAGGGAATTCATGGTATTGGCATAAGGAACAAGCTCCATGGAAAAAGCAATTGAAAGGGAAT AAATTATGTACCTGATAGAAGGCCAAACATTGTAGCACAAATTTATCCATGGAGTCAAGCTCCA AGTCGAGGACATCATCATAATCTTTGATCTTCAAAGGAAAAAGGATTTTTTTTGTTAAAAAAGC GCAAAATGTAGTAGTATATACTAGTATAGATGACAAAATAGACATAGATGCAGTCATGCAACTG ATGGCAGAATGATAGCTTTAGAGCAGTCACAATCATTATCATCCCTAATAAAGTTTAAATTAGC ATTTGCCGGTTCACTAAATTAAACAGTAACATACCGCGGCCTTGTACTCTCCAATCGCATGATG ACAAGAGGCACGCAAGTATAGGCACTCTATATTTGAACTCTCATGTTTTAAAGCAACCGACAGA TCTTTGATAGCACTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.230816172

Conservation Information
Conserved circRNAs	NA
PMCS	0.230816172

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							758018-758329(-)
						
						Potential amino acid sequence
						
							MDKFVLQCLAFYQKEIALYTASKANLEFSQFNIDDDVDPLFKEYWCKRLHPKNVAEKVYRQPPL
RISLRSGRLNKQDFKFTKHQTTLILAADSIGKKIQYNCRGFLPNQRQYRMAGLAAIEIAQKVSK
AWRFLRNPKNNAKLVRRRDKLNACQNRGGYCSTSTLSGSPTSSPNEDRISSGISLSWHDVYNIA
VKWRQISEPCDPVVWINKLSEEFNSGFGSHTPMLLGQAKIIRYYPYYQSVLEAAKNIMLDLKYV
NNAEDRAIFLTDIEKLKKECYQRSVGCFKT*(-)
						
						Sponge-miRNAs
						
							osa-miR319a-3p.2-3p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	758018-758329(-)
Potential amino acid sequence	MDKFVLQCLAFYQKEIALYTASKANLEFSQFNIDDDVDPLFKEYWCKRLHPKNVAEKVYRQPPL RISLRSGRLNKQDFKFTKHQTTLILAADSIGKKIQYNCRGFLPNQRQYRMAGLAAIEIAQKVSK AWRFLRNPKNNAKLVRRRDKLNACQNRGGYCSTSTLSGSPTSSPNEDRISSGISLSWHDVYNIA VKWRQISEPCDPVVWINKLSEEFNSGFGSHTPMLLGQAKIIRYYPYYQSVLEAAKNIMLDLKYV NNAEDRAIFLTDIEKLKKECYQRSVGCFKT*(-)
Sponge-miRNAs	osa-miR319a-3p.2-3p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0113700_circ_g.2

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