Detail information of Os03g0786900_circ_g.9


General Information
CircRNA Name Os03g0786900_circ_g.9
ID in PlantcircBase osa_circ_022187
Alias NA
Organism Oryza sativa
Position chr3: 32686164-32687535  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0786900
Parent gene annotation Tetratricopeptide-like helical domain containing protein. (Os03t
0786900-01)
Parent gene strand +
Alternative splicing Os03g0786900_circ_g.1 Os03g0786900_circ_g.2 Os03g0786900_circ_g.3 Os03g0786900_circ_g.4 Os03g0786900_circ_g.5 Os03g0786900_circ_g.6 Os03g0786900_circ_g.7 Os03g0786900_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0786900-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTACGGGGTGTATTGATCACTTGCCAACAAATGCGTTTGCTGGAGATTTACGGCTACTCAAG
CTGAATCTGAGGAACCAGTCAGAATATGCTGTGAAGaagcagtaaaagtgaggattgagcttag
gaatcctctacaaattcctgttgttgtttcttgcatctctctaatatgtcagctttccaccagt
ttggatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGCAGTAAAAGTGAGGATTGAGCTTAGGAATCCTCTACAAATTCCTGTTGTTGTTTCTTGCAT
CTCTCTAATATGTCAGCTTTCCACCAGTTTGGATGCTTCAAGTGCTGGTACTTCTTTTTTCTCT
GATCTAAAATTTTATCTTAAGAACCCCATATCCAGAAAATTATGTTGATCATTGATTTCTTTAA
TGGATCACATTACTGTGCAGTCAATAGTGTGCTGACCACAGGTGCTGGGGAAGATATAGCTAAC
ACAAAGCCTGCGATATCAACGTAATATTTCTTTTTTGCTAATTATTGAGGCTTTATTTATGTAT
GTCTTTGGATCCCAACCTTAATTCTCATGGGTACCGATGATGTTTCTGGTTTAACACTACAGAT
TTGAGGATGATGGAAATAATTTCACAGTTTCAAAGCTGGACATTGTGTTAGGAGGAAGTGAAAC
TAAAAGTGTATGCCTTCTTTGTCATTCCACTTTACTCAGTATTATCGCCTTACAAAAGTTCTGT
TAGGTTGCTTCCCATTTTCCTAGTAAATCTAATTTCTACCCTTGGTAAAATGATTTGGCGCTAG
CAAATACTGTTTCAACTATTTCTATTTGTAACCATATTGATCAATGGTATATTAGGCGATCAAA
CAAAAAGGAGGAAAGCTTTATGTGTCACTTTGTCATTTGTCTTCTTTGCTGTTTCAATTACTCC
TTACCGAGTGGTTATTGTATCCAAAAAAGATATAATAGAAGTTCTCTTGTAAAGCCAATAGTAT
TTCCATTCAGGACGATCTGCATTTTATCTTTTGGCCTGATATTGCTTCAAACTATTCATACTTG
TGGCTTTCCTCAATTTAATTTTCATTTGCTTCAATTATTAAGTCTGATGTTATAAATTATAATA
ATACCTGTAATGACAAGAGGCGATACTTAATTGACTAATGTGTAGTTATACATAATTTAGCTGA
TAATGTTTTGGTAGGCATTATAATAACCAGTTTCCTTTCCAATTCTATTAGGTACAACTTGAAG
TTACTCCAAAAGTTGAAGGTATTCTGAAGTTACATGGGATAAGGTGGACGCTCTCAGATTTATT
AGTTGGCTATCAATACTTTGAATTTGACACAAAAAGGAAAACTAAGAAAGGGAAAAAGGGACCT
CGTCGTACTTTGAGCAACACCCTGATTGTAATCAAGGTTCGGACTTGTCCAGTGCTCTCTTTCA
CATAATTTGTTCTGAGATAAGTGAGTAACTTTAATTTATTTCCAGGGTTTACCTAAACTTACGG
GGTGTATTGATCACTTGCCAACAAATGCGTTTGCTGGAGATTTACGGCTACTCAAGCTGAATCT
GAGGAACCAGTCAGAATATGCTGTGAAG
Conservation Information
Conserved circRNAs osi_circ_013737
PMCS 0.120241606
Functional Information
Coding potential Y
Potential coding position 32686229-32687497(-)
Potential amino acid sequence MQETTTGICRGFLSSILTFTASSQHILTGSSDSA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017