Detail information of Os03g0786900_circ_g.8


General Information
CircRNA Name Os03g0786900_circ_g.8
ID in PlantcircBase osa_circ_022186
Alias Os_ciR3867
Organism Oryza sativa
Position chr3: 32684180-32684390  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0786900
Parent gene annotation Tetratricopeptide-like helical domain containing protein. (Os03t
0786900-01)
Parent gene strand +
Alternative splicing Os03g0786900_circ_g.1 Os03g0786900_circ_g.2 Os03g0786900_circ_g.3 Os03g0786900_circ_g.4 Os03g0786900_circ_g.5 Os03g0786900_circ_g.6 Os03g0786900_circ_g.7 Os03g0786900_circ_g.9
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0786900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTCTATAAACTATTATTAACTCTGGTGACTGTAAACTAGGTGGTATGGAGTCCTTGGGATAT
TTGATGTAGCCATAAAGCACTTGCTGGAGGTCATTGagaaatgctctgtttgtttacaaacaac
atccttggagttatatcaatgatcatgtacattttaatgttggaaggtagttgtgtgttttagc
tcctatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAAATGCTCTGTTTGTTTACAAACAACATCCTTGGAGTTATATCAATGATCATGTACATTTTA
ATGTTGGAAGGTAGTTGTGTGTTTTAGCTCCTATCCATATATTTTTCTTGTCTATAAACTATTA
TTAACTCTGGTGACTGTAAACTAGGTGGTATGGAGTCCTTGGGATATTTGATGTAGCCATAAAG
CACTTGCTGGAGGTCATTG
Conservation Information
Conserved circRNAs NA
PMCS 0.244518167
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015