Detail information of Os03g0786900_circ_g.4


General Information
CircRNA Name Os03g0786900_circ_g.4
ID in PlantcircBase osa_circ_022182
Alias NA
Organism Oryza sativa
Position chr3: 32681690-32682014  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0786900
Parent gene annotation Tetratricopeptide-like helical domain containing protein. (Os03t
0786900-01)
Parent gene strand +
Alternative splicing Os03g0786900_circ_g.1 Os03g0786900_circ_g.2 Os03g0786900_circ_g.3 Os03g0786900_circ_g.5 Os03g0786900_circ_g.6 Os03g0786900_circ_g.7 Os03g0786900_circ_g.8 Os03g0786900_circ_g.9
Support reads 5
Tissues root
Exon boundary   No-No
Splicing signals   CT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTATGGTATTAGATCAATGAACTTTAGTTATTCCTCTGTAGTATCCAGTGTCACATGCAATT
ATTGATTTCTGAGAGCCAACCCATACAAGATACTTAgtattgccccatttgatgaatatcatgt
catctgcttatccgtcttcttgggcatattgaatgtcatgaaaccattgtccaacattttgtag
cacctaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATTGCCCCATTTGATGAATATCATGTCATCTGCTTATCCGTCTTCTTGGGCATATTGAATGT
CATGAAACCATTGTCCAACATTTTGTAGCACCTAATGATTCATCTGTTCCCTGGTAGGTATTGT
TGGGAAGATTAGTAGCCTACTTGGTAGTTTTTACTCAGTGTATGCAAGGTTTTCATGGGTATCG
ATGCTAAGAATACAAAATGAATATTTCTCGCAGATGTATGGTATTAGATCAATGAACTTTAGTT
ATTCCTCTGTAGTATCCAGTGTCACATGCAATTATTGATTTCTGAGAGCCAACCCATACAAGAT
ACTTA
Conservation Information
Conserved circRNAs NA
PMCS 0.098974359
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017