Detail information of 5_circ_ag.2


General Information
CircRNA Name 5_circ_ag.2
ID in PlantcircBase ath_circ_038703
Alias NA
Organism Arabidpsis thaliana
Position chr5: 5576809-5579580  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 AT5G16970_circ_g.1 AT5G16970_circ_g.3 5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.13 5_circ_ag.14 AT5G17000_circ_g.1 AT5G17000_circ_g.2
Support reads 45
Tissues root, aerial, inflorescences, seed, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACAGCGATACGCCCGTGCATGTTCATGTTCATAAGCACTGCATCTAGCATTTTGCCTCCTACA
TTCTCAAAGTATATGTCAATGCCATTAGGGAAACACctttttagggcagcagtaaggtcagatt
cttccttgtagttaaatgcatcatcaaacccaaacttggtcttcagaagatcaacctaacggat
cccccaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 441
Transcript exons: 5576809-5576893,5576993-5577164,5577410-5577593
CTTTTTAGGGCAGCAGTAAGGTCAGATTCTTCCTTGTAGTTAAATGCATCATCAAACCCAAACT
TGGTCTTCAGAAGATCAACCTACCTTCTCTTTACTTCCAGCGCTTCCAACAACATAACAGCCCA
TCATCTTAGCAAGTTGTCCCACAAGCTGACCAACAGCACCAGATGCAGCTGACACATAAACTGT
CTCTCCTTCCTTTGGAGAACAAACTTCATAAAACCCAGCATAGGCAGTCATACCAGGCATACCT
ACATACCTAAAAGTCCAGTGTAATAAGATAATGGAACATCAGTATGTTGGATCTTGAAATGCGC
GTGAGTCATTGGAGTGATAACACTGTACTCCTCCCATGCAACTATACCCCAGAGTAAATCTCCT
TTCTTGTAATCTGGATGTCCAGATTCTATTATTCTAGACACTCCATACCCTTGGATT

Transcript length: 442
Transcript exons: 5576809-5576903,5576993-5577164,5577410-5577584
CTTTTTAGGGCAGCAGTAAGGTCAGATTCTTCCTTGTAGTTAAATGCATCATCAAACCCAAACT
TGGTCTTCAGAAGATCAACCTAACGGATCCCACCTTCTCTTTACTTCCAGCGCTTCCAACAACA
TAACAGCCCATCATCTTAGCAAGTTGTCCCACAAGCTGACCAACAGCACCAGATGCAGCTGACA
CATAAACTGTCTCTCCTTCCTTTGGAGAACAAACTTCATAAAACCCAGCATAGGCAGTCATACC
AGGCATACCTACATACCTAAAAGTCCAGTGTAATAAGATAATGGAACATCAGTATGTTGGATCT
TGAAATGCGCGTGAGTCATTGGAGTGATAACACTGTACTCCTCCCATGCAACTATACCCCAGAG
TAAATCTCCTTTCTTGTAATCTGGATGTCCAGATTCTATTATTCTAGACACTCCATAC

Transcript length: 445
Transcript exons: 5576809-5576893,5576993-5577164,5577410-5577597
CTTTTTAGGGCAGCAGTAAGGTCAGATTCTTCCTTGTAGTTAAATGCATCATCAAACCCAAACT
TGGTCTTCAGAAGATCAACCTACCTTCTCTTTACTTCCAGCGCTTCCAACAACATAACAGCCCA
TCATCTTAGCAAGTTGTCCCACAAGCTGACCAACAGCACCAGATGCAGCTGACACATAAACTGT
CTCTCCTTCCTTTGGAGAACAAACTTCATAAAACCCAGCATAGGCAGTCATACCAGGCATACCT
ACATACCTAAAAGTCCAGTGTAATAAGATAATGGAACATCAGTATGTTGGATCTTGAAATGCGC
GTGAGTCATTGGAGTGATAACACTGTACTCCTCCCATGCAACTATACCCCAGAGTAAATCTCCT
TTCTTGTAATCTGGATGTCCAGATTCTATTATTCTAGACACTCCATACCCTTGGATTGGCT

Transcript length: 502
Transcript exons: 5576809-5576954,5576993-5577160,5577410-5577597
CTTTTTAGGGCAGCAGTAAGGTCAGATTCTTCCTTGTAGTTAAATGCATCATCAAACCCAAACT
TGGTCTTCAGAAGATCAACCTAACGGATCCCCCAAAAGTAAAACGGCTAATTAATCATTCTTTT
GAAGGAGAACAAAGAAACACCTTCTCTTTACTTCCAGCGCTTCCAACAACATAACAGCCCATCA
TCTTAGCAAGTTGTCCCACAAGCTGACCAACAGCACCAGATGCAGCTGACACATAAACTGTCTC
TCCTTCCTTTGGAGAACAAACTTCATAAAACCCAGCATAGGCAGTCATACCAGGCATACATACC
TAAAAGTCCAGTGTAATAAGATAATGGAACATCAGTATGTTGGATCTTGAAATGCGCGTGAGTC
ATTGGAGTGATAACACTGTACTCCTCCCATGCAACTATACCCCAGAGTAAATCTCCTTTCTTGT
AATCTGGATGTCCAGATTCTATTATTCTAGACACTCCATACCCTTGGATTGGCT

Genomic sequence CTTTTTAGGGCAGCAGTAAGGTCAGATTCTTCCTTGTAGTTAAATGCATCATCAAACCCAAACT
TGGTCTTCAGAAGATCAACCTAACGGATCCCCCAAAAGTAAAACGGCTAATTAATCATTCTTTT
GAAGGAGAACAAAGAAACATAAGGAAACAAAATATGGAAATGATTATCAATTCCTCACCTTCTC
TTTACTTCCAGCGCTTCCAACAACATAACAGCCCATCATCTTAGCAAGTTGTCCCACAAGCTGA
CCAACAGCACCAGATGCAGCTGACACATAAACTGTCTCTCCTTCCTTTGGAGAACAAACTTCAT
AAAACCCAGCATAGGCAGTCATACCAGGCATACCTATTAGGACAAGACAAAAACCCATCAAAGA
GTGAATATATGAAATAGATCAACAAACAAAACAGTTGAAACCCTAGACTGAAGTTATAACCAAT
TCCATTCATATGTTTCTAAGATTTTTTAGAAATCCATAATAAAGGTTATGACCTCACTGTCTCA
AGTCAAAACATTGTATCATCAAGAAGCAGATTTCCAAAATTTTACAAAGTGATTCCACCTTACA
AAACTATGAAAAAGGTTGAGATTAACATACCTAAAAGTCCAGTGTAATAAGATAATGGAACATC
AGTATGTTGGATCTTGAAATGCGCGTGAGTCATTGGAGTGATAACACTGTACTCCTCCCATGCA
ACTATACCCCAGAGTAAATCTCCTTTCTTGTAATCTGGATGTCCAGATTCTATTATTCTAGACA
CTCCATACCCTTGGATTGGCTACACCAAAACACACAACGGCAACAACAACAGTCAACACGATAG
ACATAGCAAAAAAACAGAACCAAGAGAGACACAATTTCTTCTCAGTGTCTTCAAGAACACCAAA
TTGTCATCAATAAGAAGCATCTAGTTTCTTCACATGCAAACCAAACAAAATAAACATTATCATC
ATTACCTGGCCGGGAGTGTAAGCTTGAGCAAGAGCAGCAGTGGAAGGATCAGGTTTCCCCATGC
GAATTCTCATGTAAGGATCGCATGACAAGTAGAGATTCTTCACTAGAACAGAGTTAGTACCTTC
CGGAACCCTAAGTTCGACGGTGGTGGTAGTGAAATCGAAATCGGATTCCGTAGGGAAACCACTC
ACGTAGTCTTTCAATATGACTTGCTTGTTCGTCGCCGTCATCGTTGATTCTCGTGACTTCACCA
AATTTGTTACTGCTTCTTCTTCGGTTTCTCTCGATGACGCCGCTGCTTTTATAGAGTCATCTCC
AGTGTGCCACGAATTCATGATATCAACTTATCAAGTATGACGTCACTGCTTATGTGTTCTGATT
TTTCACATTTTGGATTCTTTCTCTTTCGAGCGTTTTTTTCTCTCTTTGACTTTCACATTCCTTT
TGCATACCTTTTTTTTTCCTCTTACGTATCTCTCCTTTCACATTTTGCTTTTCGTCTTTTTACA
CTAGAGAACTAATTCTAAACTCGTATTAAATTTCTCACTAATGATAGTAATTGGAAAAACTAGA
GGTTTTTGACACCCTCAATACATTGTTAAGGTAAATGCAACTTTTTGCGGAGTCTTTTTGGAAA
TAAGATAGAAAACAGAGTTCGAAGGCTAAAACAGAGCAATCTGGTGCTTAAGTTCTTCTTGTAT
GGAACCAGACGCGGAGTACGTCTTCGAGTTTCGTCGAGCTATTTGGTATTAAACGTAACATTGT
GGTTAATCCAGCTTCAATAGCTCTACTTTGAGTTACCAAAATTTAAACACGTTGTGGTCAATAT
CCTCGTTTGTTGGTCACCTAATTGACAAATTTGGGTAGGTTTACTAATTTCCAAATGGCTAAAA
TGTGATTGGTCCAGTCCACTTTGCCAATTGATGAAAGAAAAATTGAAATAGGTGGTAACGGTGA
AAATAACTTTATAACATATCACACCAAACCCACAAAACAGTATCCCCATCTTCCGAATTAGTGT
TCGCAACACTAACTGTTAAAACAGAGCACAAAACAGAGCCATGTCCTATAATAAAGAAGAAAAG
GAGTTGCACAAATTGTATTCATTGATGCTTAAACACGCATACTTGGGAACAAGAGCTAGAAACA
TGGGTTTGTATTAGGCTTCTTTTTTGGATTTGTGAGAGAGGTTTTGGCTTGTTTGTTACTACTT
ACATACATTTTGTGAACCAAGTCACATAAAATGATAAAACCAATAACAAACAAATTAATCTTAC
TGTATATACTATAATTACTATTATTCATAAACCAAAAACTCACGGTTGGGTTCAACAGCCATAC
AAACTCTTGTTGGATAAATATAACATTTCTCCCAAATAAGTATTATTCCCTCACGAGCAATAAA
ACCTTACTCCCAATTAAAGTATTCATCATTCACGAGCAATAACAACAACTTGTTTCCCAACATT
CTTACCATGGAAGAGTCCCACGAGAGCTTCAGGACCTTTCTCGAGCCCATCAGCTACATCTTCC
ACGTACGTTATCTTCCCTTCTTTAATGTGCGGATGCAGAAACTCCAAGAACTTTGAGTATTCGT
CGTAGAAATCAGACACTACAAAGCCTTGAATGCGGATTCGTTTGTAGATTATGTTGGATAGGTT
GTGTACACCTTCTTGGTTCTCAAGATTGTACTGTGAGATCATTCCACAGACAGCGATACGCCCG
TGCATGTTCATGTTCATAAGCACTGCATCTAGCATTTTGCCTCCTACATTCTCAAAGTATATGT
CAATGCCATTAGGGAAACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.714735267
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017