Detail information of BGIOSGA016140_circ_g.1


General Information
CircRNA Name BGIOSGA016140_circ_g.1
ID in PlantcircBase osi_circ_014237
Alias Chr04:15491130_15494407(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 13163063-13166341  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016140
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016140_circ_g.2 BGIOSGA016140_circ_g.3 BGIOSGA016140_circ_g.4 BGIOSGA016140_circ_g.5 BGIOSGA016140_circ_g.6 BGIOSGA016140_circ_g.7 BGIOSGA016140_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016140-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTAAAACAAACTGAACCATATAAGGCTGAGCTGGAGCGAATGTTGGTTCAACATGTCTTTCCG
GAGTTCAGTAGTCATGTTGGACACTTACGTGCGAAGgtttcagtacacaccacaacacttggtt
agattgctacagattattgtggatggaaattgtgatatggctgttagacagttcgcaagcattc
atttcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCAGTACACACCACAACACTTGGTTAGATTGCTACAGATTATTGTGGATGGAAATTGTGAT
ATGGCTGTTAGACAGTTCGCAAGCATTCATTTCAAGAATTTTGTTGCGAAGAATTGGTCACCTA
CTGATCCTGGTATGAAAAGGTTACTATTTGAGCAATAATTCCTTGTGTCTCGTTGACTTACAAT
TCGTCCTTCTTTAGAAGAAAAACATATAATTCCAGAAAGTGACAAGTCCATGGTCCGTGAGAAT
ATATTGGGTTTTGTTACTCAATTACCTCCATTGCTAAGGTATTTCTCACTGTCCACCTACCCTT
TTCTTAATGAACAACATTTTTGTGCCTCTCTCCAAATGCTATAATCGTAGTCCTTATGCTTTTG
GTGTACTGTTGTTTCTGAATTCTAGATAAATTGACTTCTAAGGCATTTTATTTCAATACTGGAG
TACTTTTCTTCTTACAATTGATGTCAATCTATAAATTCTGGTTGGCCGTCTCACAAAGTCACAA
TGTTTGCCTACACATATTATTGAATGCTGACATTTGTTTAAGTAATTTAGACCCCAGCCAATTG
GAGTTAAGATGAGTCTGAAAATACCATTTTTGACTCATGTTTGTACTTTGGATAGAATATATTT
TTGGTCCTTGAATTCGCAAAGTTCATTTTCACCCTGCCTTTAAAAACAGGTTGTTTACAACCTT
CAAAACTGGATAAGTAACACCTCGATCCCTTTTCCACTGCCATACCAATCAAAACCACTGTGGA
ATAGGGTTCGGGCCTTCAAGGTGTTATCTGTTCAGTTTTGTTAGACCTATATGACTGTTTCAGC
ATTTCTAGATATTGAATTTAGGTTAGTTTTTCACAGAAGCATCATAAGTTTGAACGGAATGCAC
TGTCAAGTTCTACATTGTAAACAATAACTTGTGGTACTTTTATTTTTGATGAGTATTTCAGTGA
AATTTGTAGTGGATGTGTTTTTCCTGATGACGAAGCACAATATTCTTCAGTACTGATGGTTATG
AAATGTGCATACAAGTAATTGACACATATTTCATGGTCTGTAGAGCCCAGCTTGGAGAAAGTAT
CAAGACCTTGATCCTTGCAGATTATCCTGAGCAGTGGCCTAGTCTTCTTCCTTGGGTAACACAT
AATCTAGAATCACAGGATCAAATATTTGGAGCACTATATGTGCTAAGGATTCTTGCCCGGAAAT
ATGAGTGAGTCTAAATGCCAGAATTCTACCTTCTTTTTTATTTGTTTGTATTCACTCTATCCGT
CTTCCTATTTTGAATTATTTTTCTGTAACTCCAAAAAACTTAGGATTTACGTGTTTCTGTTACT
CTGCTGTGAAATATCTCTACACATCATGTTATTCACTCTATTTGTTTTATTTGCTGACTTTGTG
ATCTTTATTGTAATTTAGAGATTACCCAAAGAAATAGTGTAAAGATAACATTGTTGTTATAGTT
TTCTTAAAATGATGGGTGCACAACATAATTCTTTGCTCTATGAACATTTTTCTGGACAACATCA
TACAGTGCTTACCTTTTTGTCTTTTGTTTATGTGAGCTGCCACACTATCTCATTACTTTCTTCA
TGATTAGGTTCAAGTCAGAGGACGAGAGGATACCTTTGTATCAAATTGTTGAGGAATGCTTTCC
TCGTTTGTTGAATATATTAAGAAATCTTGTTCCGATTTCCAACCCTCCAATTGAAGTAGCTGAC
TTGATCAAGCTGATATGCAAAATTTTCTGGTCATCCATTTATGTAAGTTCTTTGCCTTATTATG
TTTTCCATTTTTTTTTCAATACTCATTATGCCATGTATTTTCTGCAGCTAGAAATTCCAAAGCA
ACTTTTTGATCCAAATGTCTTCAATACTTGGATGATTTTGTTCTTAAACTTACTGGAGCGACCA
GTTCCAGTGGAAGGACAACCATTGGATCCTGACGCGAGGAAATCTTGGGGATGGTGGAAAGTCA
AGAAATGGATTATCCATATATTGAACCGTTTATACACTCGGTCTGTGTCAAGTAAACTTTTTGT
GATTCTTGTCATTTGTATTCTAAACCTGGTTTTCATTACAGGTTTGCTGATATGAAGCTTCAGA
GACCAGAAAGCAAAGCCTTTGCTCAAATGTTCCAAAAGAACTATGCTGGAAAAATTTTGGGGTG
CCATTTGCAGTTGCTCAATGCAATACGTACTGGTGGCTATTTGCCTGATAGGGTTATCAATCTT
ATTCTTCAATATCTTACCAACAGGTTTGTGGAAAAACTGTGCAGCAGCATTCTGTATTTCCTTA
GTAGCTCTGTGGTCTGCCTTCGTATTGTTTTTGCCACTCCCTTTCTCCATTTTGTCTGGTTTTC
CGCATGTTTCACATGGTTGCAATCAGTCTTTATCTCAGTTCCATGACAAATTGCTCTAGTCATC
AGATTTGTAATGGCACAACTTCCACTTCATTCCTGCGATATGGATAATTTTCGCCTGATTTATA
TTTACATGCCTTTCATTATTTTAGTGTACAGTCAGTATGTAATATACGTTTTTTGTTGAGGGGG
GGGGGGGGATTCAGTGCTTTCTGAATTCTTTGTGGCTGAATGTAAGTATTTCTTGCAGTGTCAC
GAAGAACAGCATGTATCAGCTTATGCAACCACAAATTGACATAATTCTATTTGAGATAATCTTC
CCATTAATGTGCTTCAATGATAGTGACCAGATGTTGTGGGATGAAGATCCTCATGAATATGTTC
GGAAAGGCTATGGTAATATGTTCATCTAAGCAACTTTTTTTAAAAAGAATTTGCATTATTTCTT
CTCAATGTTCTGCAAGGTAGTATGTGCACTCCATTAGTTTTCTGTAGCCATGATACTACTTGGT
ACTTTTGTGTACAGATATTATTGAAGATTTGTATAGTCCTCGAACAGCTGCTATGGACTTTGTG
AGTGAATTGGTAAGAAAACGAGGGAAAAGCAATCTGCAAAAGTTTATCCATTTTATTGTGGAAA
TATTTATGAGGTATGTGTCATCCTGTGATTAATATGTGTGTGCTTAACTTTGTGAGTTATCTAA
TATCTGATTGAAGAACATTTTGGCAGGTATAATGAGGCATCCATTGAAGTGAAGCCATACCGCC
AAAAGGATGGTGCGCTTCTTGCAATTGGGACATTGTGTGATAGGCTAAAACAAACTGAACCATA
TAAGGCTGAGCTGGAGCGAATGTTGGTTCAACATGTCTTTCCGGAGTTCAGTAGTCATGTTGGA
CACTTACGTGCGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021