Detail information of BGIOSGA016140_circ_g.4


General Information
CircRNA Name BGIOSGA016140_circ_g.4
ID in PlantcircBase osi_circ_014239
Alias Chr04:15492968_15495800(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 13164901-13167735  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016140
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016140_circ_g.1 BGIOSGA016140_circ_g.2 BGIOSGA016140_circ_g.3 BGIOSGA016140_circ_g.5 BGIOSGA016140_circ_g.6 BGIOSGA016140_circ_g.7 BGIOSGA016140_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016140-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAACTTGGATCACCCTTTCGAATAGATCACAATCTATATTTTGTATTTCTTCTACAGATCTAG
ATGAGATCCGACCAATTCTTCCTCAACTACTTGATGgctagaaattccaaagcaactttttgat
ccaaatgtcttcaatacttggatgattttgttcttaaacttactggagcgaccagttccagtgg
aaggacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTAGAAATTCCAAAGCAACTTTTTGATCCAAATGTCTTCAATACTTGGATGATTTTGTTCTTA
AACTTACTGGAGCGACCAGTTCCAGTGGAAGGACAACCATTGGATCCTGACGCGAGGAAATCTT
GGGGATGGTGGAAAGTCAAGAAATGGATTATCCATATATTGAACCGTTTATACACTCGGTCTGT
GTCAAGTAAACTTTTTGTGATTCTTGTCATTTGTATTCTAAACCTGGTTTTCATTACAGGTTTG
CTGATATGAAGCTTCAGAGACCAGAAAGCAAAGCCTTTGCTCAAATGTTCCAAAAGAACTATGC
TGGAAAAATTTTGGGGTGCCATTTGCAGTTGCTCAATGCAATACGTACTGGTGGCTATTTGCCT
GATAGGGTTATCAATCTTATTCTTCAATATCTTACCAACAGGTTTGTGGAAAAACTGTGCAGCA
GCATTCTGTATTTCCTTAGTAGCTCTGTGGTCTGCCTTCGTATTGTTTTTGCCACTCCCTTTCT
CCATTTTGTCTGGTTTTCCGCATGTTTCACATGGTTGCAATCAGTCTTTATCTCAGTTCCATGA
CAAATTGCTCTAGTCATCAGATTTGTAATGGCACAACTTCCACTTCATTCCTGCGATATGGATA
ATTTTCGCCTGATTTATATTTACATGCCTTTCATTATTTTAGTGTACAGTCAGTATGTAATATA
CGTTTTTTGTTGAGGGGGGGGGGGGGATTCAGTGCTTTCTGAATTCTTTGTGGCTGAATGTAAG
TATTTCTTGCAGTGTCACGAAGAACAGCATGTATCAGCTTATGCAACCACAAATTGACATAATT
CTATTTGAGATAATCTTCCCATTAATGTGCTTCAATGATAGTGACCAGATGTTGTGGGATGAAG
ATCCTCATGAATATGTTCGGAAAGGCTATGGTAATATGTTCATCTAAGCAACTTTTTTTAAAAA
GAATTTGCATTATTTCTTCTCAATGTTCTGCAAGGTAGTATGTGCACTCCATTAGTTTTCTGTA
GCCATGATACTACTTGGTACTTTTGTGTACAGATATTATTGAAGATTTGTATAGTCCTCGAACA
GCTGCTATGGACTTTGTGAGTGAATTGGTAAGAAAACGAGGGAAAAGCAATCTGCAAAAGTTTA
TCCATTTTATTGTGGAAATATTTATGAGGTATGTGTCATCCTGTGATTAATATGTGTGTGCTTA
ACTTTGTGAGTTATCTAATATCTGATTGAAGAACATTTTGGCAGGTATAATGAGGCATCCATTG
AAGTGAAGCCATACCGCCAAAAGGATGGTGCGCTTCTTGCAATTGGGACATTGTGTGATAGGCT
AAAACAAACTGAACCATATAAGGCTGAGCTGGAGCGAATGTTGGTTCAACATGTCTTTCCGGAG
TTCAGTAGTCATGTTGGACACTTACGTGCGAAGGTAACAAGCTATAAATTGGTGTGCATTTTAG
ATCATGAACATTTTTTCTTGAAGCCACCATATTTTGGTAGTACAATTGTAGTTCTGCATGACTT
CTGCATCTAATTCTTCCTCTTTTTACTTAAAACTTGGAACATTTGGTAGGTTCTGTCCTGAAGT
ATTCTACCTAGTCCGAAATTCATAAGTTTGAATTCTCAATGTCTCCAAAATGCAATTGTCCAGT
AATTTAGTTTGAGGCATGCACATATATTTATAAATGAAAAGTTTATACGTACTAAATTTTGTCT
TACTAAACTCTTCATGCTGTGAGTACATCTAGATTTTCTGTAACTTCCATCTACTTAAATCAAA
CGGTTGAGATCATTGTTTATAAGAGTTTTGTAAAAGAAATTTAGTACGTGTAGCAGTGCTCTTT
TATAAAAAGAGAACAATCCTCATGTGCCTTTAGAAATTCATTGGTTTCCTTATATTGCCACCAA
ACAAAAATTTTCTTCCCTTGGATGCCATACACATTACACAGACACCGTTAGAAGCAATTCTGTC
AGTTTTTTTAATGGCGAAATTATCCTTAGATTCTCCCTTATCTCTCACATCTCCCCCAAATCAC
ATTTGATTTCTCCTCTATCGAGGTGCCGCTGTCCTGTGTGCATCGTCTTCTGTTCCACATCTGG
TGACATCTTTTGTCCCCTGCTGCCTATGGAGTCATCCTCCCAAGTGCCTTTGTTATCCTACCAT
GCCCCCACTGCAGTGATGTCATCCAAGGGCCAACATCATTGGCCCTTGCCCCACCGCTGGTGCC
CCTGGTCCGTTGGCAGTGACATGTAATATAAGATTCCAATTTAAAAATGCTAAGTTTTAGTACC
ATTATAAGATAGTTCTTCCACAATGTACTTTCTTGCAAATTATTTGACTGCAATTATCATATTT
GAATGACTTGTTACCTTAAGGGTCCTATTTTACTTAAATATATTATATTTTTACTTTGTGTAGC
CTTTTTTGTGTTCTATTATTGTATTCTATTAATGCAGTTATTCCCCTGTTTTTTCTTTAGTACT
TCTTATTTGCTTGTTTCATTAAGCTGATTTTTACCATATGATGTGTAGGCAGCATGGGTTGCTG
GGCAGTATGCTCATATCAATTTCTCAGATCAAAACAATTTTCGCAAAGCTATGCATTGTGTAAT
CTCTGGTTTGCGTGATCCAGAACTTCCTGTTAGGGTGGATTCAGTCTTTGCACTCCGTTCTTTT
GTTGAAGCATGCAAAGGTAGTCTTTATTTAATTTCTTAGAGACCTAATTAACTTGGATCACCCT
TTCGAATAGATCACAATCTATATTTTGTATTTCTTCTACAGATCTAGATGAGATCCGACCAATT
CTTCCTCAACTACTTGATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021