Detail information of Os10g0522900_circ_g.1


General Information
CircRNA Name Os10g0522900_circ_g.1
ID in PlantcircBase osa_circ_007732
Alias NA
Organism Oryza sativa
Position chr10: 20281716-20283765  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0522900
Parent gene annotation Isopenicillin N synthase family protein. (Os10t0522900-01);Simil
ar to Oxidoreductase, 2OG-Fe oxygenase family protein, expressed
. (Os10t0522900-02)
Parent gene strand +
Alternative splicing Os10g0522900_circ_g.2 Os10g0522900_circ_igg.1 Os10g0522900_circ_g.2 Os10g0522900_circ_igg.3 Os10g0522900_circ_ag.1 Os10g0523100_circ_igg.1 Os10g0523100_circ_igg.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0522900-01:7
Os10t0522900-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCTCCTTAGATAATGCGTTGTCTTGTGTTATGTATCTGTAGGGCCCTGATTGTTAATATCGG
CGATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGgcttgcgtggagtacggattcttctacg
tggtcaaccatggagccgagggattggcggagaaggtgttcggggagagcagcaagtttttcga
gcagccgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGCGGAGAAGG
TGTTCGGGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAA
CAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTCGACGCCTCGTCCAAATTCAAA
GGTCTGCGCCTCATGTTCCATAGCCAATTCTTCGCTTGAGCTTTGCAGTTTGCAGTTTGCACTG
CTCTTCTATAGCCAATTTGAGCCTAAGGGGTGTCTAGCTAGGTAACTGTAATAATAGAAGATGA
CGAGTTGTGTCGGCAAAAGGCAGAACTTGACAAATTAGTGCCTGATGATGAAGTATTCTTTACG
CGTACAAGGCTATATAAGTACATTAAGAATGTCCCAATGCTTGTGAATGATTCCTTTTAGAAAT
GATTACAAGTCATGGCTCTGGTTTGATCGACCTGAAGGTCGCACAATCTTCAATTAGTACAAGG
CCAATATAATTCGAGATGAAGCAGATAACTGGATAAGTGCTGAAGAACCATTTACCACTTTAAC
GTATCCTCTCTGCCTCTAGTTTGAACAGCCGATACATCTTGTCGATTTTACCTTCTTGTGTTTG
TAATGATGCAGTTGAGACTTTTGTTTGTGATTTGTGATCCAGGAGATCTCAATGAAAATTACTG
TATCGGACCTATCAGAAAAGAAGGTTATCAGAATGATGCTAACCAATGGCCTTCTGAAGGCAAT
TCCCCCTCCTCTTCTTTTTCTTTGTTGTCATTTCTTCGAGAACATAAATAAATTCTTTCTTTGG
GTATAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTGTAAGT
TATCATTTTGCCCATCTCAGCAAAGGAAATTTAACTGCTGTGATGCAATCTACAACAATCAGTC
CATCATTAATTCGCTGCATCAGCATTGTGTTTGTAATACTTTTATATAACTATTTGTCTCAAAT
TTGAATATTCCTATTTATTCGCTACCTCTTCCAGTGCTACTGGTAAAAGGATACTCTCTCTAAT
TGCTCTGAGTTTGAATCTCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTG
CACTACCCAGGTAACCTTAGTGCGAGTCCCTTTATAATATGAAATTAACCAAAGTTGCATTCTA
ATAATATGCAGCAGAGTGCTAAGTTGAGCATTTTCATTATTGTCGAGCCAATTGAGCTTCTTTT
CCTCCTTACACAAACACACAGTACTTATTGGTTTTGTATGAATAGAAAATATTTTTAAATGCAG
GTGAAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTACT
AACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGGTACACCATGTTCTCACAAATTTTGAT
TCTCCATCTCAGTTCTGTTCTCTTTTGCAGCTAATTGATCATTTAAAACAATATAGGAGTATGC
TCATAATATTTTATGAGGATGAGATTATTGCCCACCTTTTACCACTTTCAAGCAAAACAATACC
TCTTCTTTAGAAAAGTAGAAATATAATATGCATAATTTTTTGCACTTATGTTCTGGTTTCTCTC
ACTGTTTTGAGTTTTCAGATATGCAGGGAGAAGGATAGGTGCCCCCAGCTTTGGGAAGACGTTC
ATCACATTGAAGGGTAAATAACAAATATTTTTTTAGTAAAAAAAACAAATATTTTTTATGATAT
TAATGAATAACAATTTCATATATATCATTGCTTTGTCTTTTTTAGAAAATGGATTAAAATCCGG
TCTCTACATCCAAACTGGATGTACATAGCCCTACATCATATGAAATTGCTTTACGCCATTGCTT
TGTTCTTAGCTTTCTGGACCTCAATTCTGTGTGCTCCTTAGATAATGCGTTGTCTTGTGTTATG
TATCTGTAGGGCCCTGATTGTTAATATCGGCGATTTGCTACAAAGGTGGACTAATTGTGTTTTC
AG
Conservation Information
Conserved circRNAs NA
PMCS 0.103548878
Functional Information
Coding potential Y
Potential coding position 20281828-20281836(+)
20281756-20283447(-)
Potential amino acid sequence MALLRNRNYLGYTPLGADKLDASSKFKGDLNENYCIGPIRKEGYQNDANQWPSEENFPCWKETM
KLYHETALATGKRILSLIALSLNLDVEFFDCPVAFLRLLHYPGEANESDDGNYGASAHSDYGVL
TLVATDGTPGLQICREKDRCPQLWEDVHHIEGALIVNIGDLLQRWTNCVFRLAWSTDSSTWSTM
EPRDWRRRCSGRAASFSSSRWGRRWRC*(+)
MVDHVEESVLHASLKTQLVHLCSKSPILTIRAPSM*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017