Detail information of Os10g0522900_circ_g.2


General Information
CircRNA Name Os10g0522900_circ_g.2
ID in PlantcircBase osa_circ_007733
Alias Os_ciR6861
Organism Oryza sativa
Position chr10: 20281909-20282365  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os10g0522900
Parent gene annotation Isopenicillin N synthase family protein. (Os10t0522900-01);Simil
ar to Oxidoreductase, 2OG-Fe oxygenase family protein, expressed
. (Os10t0522900-02)
Parent gene strand +
Alternative splicing Os10g0522900_circ_g.1 Os10g0522900_circ_igg.1 Os10g0522900_circ_g.2 Os10g0522900_circ_igg.3 Os10g0522900_circ_ag.1 Os10g0523100_circ_igg.1 Os10g0523100_circ_igg.2
Support reads 2/1
Tissues root/root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGAAGAACCATTTACCACTTTAACGTATCCTCTCTGCCTCTAGTTTGAACAGCCGATACATC
TTGTCGATTTTACCTTCTTGTGTTTGTAATGATGCAgtctgcgcctcatgttccatagccaatt
cttcgcttgagctttgcagtttgcagtttgcactgctcttctatagccaatttgagcctaaggg
gtgtctag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 457
Transcript exons: 20281909-20282365
GTCTGCGCCTCATGTTCCATAGCCAATTCTTCGCTTGAGCTTTGCAGTTTGCAGTTTGCACTGC
TCTTCTATAGCCAATTTGAGCCTAAGGGGTGTCTAGCTAGGTAACTGTAATAATAGAAGATGAC
GAGTTGTGTCGGCAAAAGGCAGAACTTGACAAATTAGTGCCTGATGATGAAGTATTCTTTACGC
GTACAAGGCTATATAAGTACATTAAGAATGTCCCAATGCTTGTGAATGATTCCTTTTAGAAATG
ATTACAAGTCATGGCTCTGGTTTGATCGACCTGAAGGTCGCACAATCTTCAATTAGTACAAGGC
CAATATAATTCGAGATGAAGCAGATAACTGGATAAGTGCTGAAGAACCATTTACCACTTTAACG
TATCCTCTCTGCCTCTAGTTTGAACAGCCGATACATCTTGTCGATTTTACCTTCTTGTGTTTGT
AATGATGCA

Genomic sequence GTCTGCGCCTCATGTTCCATAGCCAATTCTTCGCTTGAGCTTTGCAGTTTGCAGTTTGCACTGC
TCTTCTATAGCCAATTTGAGCCTAAGGGGTGTCTAGCTAGGTAACTGTAATAATAGAAGATGAC
GAGTTGTGTCGGCAAAAGGCAGAACTTGACAAATTAGTGCCTGATGATGAAGTATTCTTTACGC
GTACAAGGCTATATAAGTACATTAAGAATGTCCCAATGCTTGTGAATGATTCCTTTTAGAAATG
ATTACAAGTCATGGCTCTGGTTTGATCGACCTGAAGGTCGCACAATCTTCAATTAGTACAAGGC
CAATATAATTCGAGATGAAGCAGATAACTGGATAAGTGCTGAAGAACCATTTACCACTTTAACG
TATCCTCTCTGCCTCTAGTTTGAACAGCCGATACATCTTGTCGATTTTACCTTCTTGTGTTTGT
AATGATGCA
Conservation Information
Conserved circRNAs NA
PMCS 0.219773742
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017