Detail information of Os10g0522900_circ_igg.1


General Information
CircRNA Name Os10g0522900_circ_igg.1
ID in PlantcircBase osa_circ_007734
Alias Os_ciR969
Organism Oryza sativa
Position chr10: 20282554-20287621  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0522900_circ_g.1 Os10g0522900_circ_g.2 Os10g0522900_circ_g.2 Os10g0522900_circ_igg.3 Os10g0522900_circ_ag.1 Os10g0523100_circ_igg.1 Os10g0523100_circ_igg.2
Support reads 22
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTGATTTTGTGATCCAGGAGACCTTAGTGAGACATTCAAAATTGGGCCTATTGGAGACGAAG
GTTTTCAGAATGATGCTAACCAATGGCCTTCTGAAGagaatttcccatgttggaaggagacaat
gaagctataccatgaaactgcactgtaagttatcattttgcccatctcagcaaaggaaatttaa
ctgctgtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 136
Transcript exons: 20282554-20282689
AGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTGTAAGTTATCAT
TTTGCCCATCTCAGCAAAGGAAATTTAACTGCTGTGATGCAATCTACAACAATCAGTCCATCAT
TAATTCGC

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_008621 osi_circ_008622
PMCS 0.366376233
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015