Detail information of BGIOSGA031636_circ_ag.1


General Information
CircRNA Name BGIOSGA031636_circ_ag.1
ID in PlantcircBase osi_circ_008557
Alias Chr10:20524594_20539132(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17561439-17572381  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA031636_circ_ag.2 BGIOSGA031634_circ_igg.1 BGIOSGA031634_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATAAGCAGTAAAATTTTCAGAGGAAAAGTGTTACCTCATCAGAAAGTTTATATGCTAGTTGTG
ATCTCCTTACTTCAATTAATGTGCCTATGTCAAGACggaggtggtggtggatgagtcggaagag
gcgaggtggaggaggaggaggaggagatgggatagcgttacgaggcggggattggtgaggtcgg
ggcagggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR1320-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021