Detail information of BGIOSGA031634_circ_g.1


General Information
CircRNA Name BGIOSGA031634_circ_g.1
ID in PlantcircBase osi_circ_001105
Alias NA
Organism Oryza sativa ssp. indica
Position chr10: 17571772-17574799  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method DCC
Parent gene BGIOSGA031634
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031636_circ_ag.1 BGIOSGA031636_circ_ag.2 BGIOSGA031634_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   TT-TC
Number of exons covered BGIOSGA031634-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCTGAGGCAGACAGTTAGAAATAAAAGGGCCTAGATCTTGGGGCACTACCTCCATGTGCACA
TTTGCAGCATCTATATCATTCAACCCAAGGGCCTTTttctcccgggaaattgctcagtactgta
agcataccattaaatgaaaggatgcttttcacttcttcaacaacctgtgttcggttattcctgt
aaagatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCTCCCGGGAAATTGCTCAGTACTGTAAGCATACCATTAAATGAAAGGATGCTTTTCACTTCT
TCAACAACCTGTGTTCGGTTATTCCTGTAAAGATATGGTTTATGAAGCCAAATCCATTCATGTT
ATGAAATGTAGTGAATCTATATTCACATGGACAAGTTGTCCAAAAGTGCATTTCATACGTTGCT
TTGGTACGCGACTTACAAGTTGTTCAAGGCTGTTGAAATGTTTTCTTCAACTAACTTCTTTGCA
TGCTCCCTGAACATCTCAGCAGCAATCTGCAATAAATTTAAATAATAGAATATGCCGCTTAACA
ACGTAGTATGCCTATATGAATTCCATTCATCTTACATATCATATTTAAGATTTATGTGAATAAT
CAAATATAGAAAACTTTTTTGTTGTCCAAACGCCAGAGTCTGACATCTTGGCAAGCGTGCACAC
TTAGATATAAGTGGTATTTTCCCAAGTATTTATCAAAATGAACGAAAAAATGGGGAAAAGCAAA
TAAGCAGTAAAATTTTCAGAGGAAAAGTGTTACCTCATCAGAAAGTTTATATGCTAGTTGTGAT
CTCCTTACTTCAATTAATGTGCCTATGTCAAGACCTAGAGAAACAGAATATGTTGAGTTGAGAT
TTCTGTAGAAATGCAGTAAATAGTCTATCAAGTATAATTATACAAGCAGGAGATAACATTGCTA
TCTGCAGTTCTGCACTGCTCCAAGTCTCTGTTCAGACATAAATACTCTGTAACAGTGAATCTAG
TATACATAATGACAGTTATGGATGGAACTAATGCCTTAAAAAGAGAAATATAAGTGTCTCAGTA
CCTCTCCCAATAGACTTGAGCAATGATGCATATAAACTCTTGGCACTTTCCCTCATAACATCGT
CTATCTGCCGAAAACAACAATAATGTAACTAAATAAAATCTTATCATCAAACAAGATATAAACC
CAAAAGAAGCTATGCACTAAAATATGAACAAAAGCACATGAGAAATATGTGAATGCGCATTTTG
TACAGCTTGCAGGCAATCTGCATACTCATTGCTGATAAGGAAATTTTGTTCATGCCACTACAAA
GTTTGCATAGGCTACTAATTAATGCCAGTAATAAGCAAGCACCGGTTTTTGTATTTGACACAAA
ATTAATTCCTTATTTCGTCTGCACCATCTTTGTGTGTATTGTTTTGCCAATACAGCTAACCAAA
GTCTTAGTCAAACTTCTATCTCGCACCGACAAAATTGACAAAGAGGCGTTATAGTCAGATGAAG
TTCCTGCCATCACATGAACACACCCCTTCATCCAAATTTGGTGTTATTCATTTAATATTTCAAA
AAACAATACCAAATTTTAATTTGTTGAAATTGTCACACTAAAAAATACTGACTCATTCAAATTG
ATGAAAATCATTCAATAATTCAATTCGTCTAAAATCTTGATAAAAAATAAATTATTTGTAAATT
TGTAGATAAAAGCACCTAAGCTTTTAGAAGTCTGTAGTTTTGGTTATTTTGGTGCACTCTGAAT
TTTTTTACTGAAAGTTCCAACCCTTCGAGAGAAATGGTGAGAAAGGGCATCAAAATAGAGGTAA
AGGCTGACAAATTGGGCACACAATTTGATAGAGGCATTTTGGTCTTAGTAAGAAAATATGTGAA
AGTCAAACGCCATAGTACTACAGTAGTAATGGTCAACTAGCAGGGTTTGATGATGATGGAAAAA
ATTAGATAAGCGCAAAATTTTGGAAAGCAAAAATGAAATGGTGTAATTTTGATGGCAAAAAACA
GCATACTTTTCTAGTGGCAAGAACAAAGTTTTCCCCCAAGAGAGGTCTCCCCTTTCAAGTACAT
CTCCAGTATAAAACTCGAAAATCATTTTGTGCCCATGCAATTCAAAATTTTGCACCTTGACCAA
GCCAGGACAAATTATAAATAACTTTCAAATTTATCGCATGCACATCCTTTCTTTTTTGGTTCTA
TGCAGCATGCAAAATGTTGAGCATTATTTTATTATTTTTTTTTGGGGTGGGGGGGGGGGGGGGT
GGGGATAAAAGTTGTATCACATAATATTACATGCACCATATCCAGCATGCCACAGTGGGCCATG
TATTTTTTTTTCATAGTTATAGCTGATAACTTTACAAATTGTAGATATTGAAACTAACCACAAG
AAAATAATATTGGAGTAATTGTCATAATTCAGACTTCCATATTGTTATAAAATTTGCATTTAAT
TGCTAATAATGTTACAGTGGCAAGAGCAATGCTCTAAGTTGCATTTTTTGGGATTAAGTGGAGA
ATATTATTTGCCAATACATGTGACCTGATGCTGACCTTGACAGTGTAGGCTTTCGGCCAAAGCC
ATAACCCAACAACCATTACACTGAGAACAGCACAATAGTACAACATTATGCAAAGAGATTACTC
AACATGCTAGAGGCCTTTAAGAATTGCAGTGGTAACAATGTCAGAGAATTTGTGCAACTAGACT
TCAAATACCAGCATAGATGATTAAAATTCTCTAATGATCCCCTGCTTTCTCCATATGACGAGAT
CATGAAACAAAGAGATGATATGCACGGTTTAAACGAATGATGATTATTTTAATTAAGTACCTGA
GATTCATGAACCCCGAAAAGACGTTTCCATGGAAGTAGGTATTCATATGCATCCCGAAACACAA
GATTTGTTACAAATATAAGCTTTTCAAATGCCTGCCAAATATTTAAAATGGTTATCATCGGATC
AATAGAAAATTCAAAGTACCCATGTATATATCACAGCACAACCACGTACCTGCTGTTGTCCTAC
ACCAGCATTGCGATCAATGCGTTTAGCAATCTATTACAACAAGCGCAATGAAAGAAGTGAGGAG
GAAGGGAAAACTGTGGAAATGTGAAAATGAAGACTAAAGTAGAAGAAATATCTGAGGCAGACAG
TTAGAAATAAAAGGGCCTAGATCTTGGGGCACTACCTCCATGTGCACATTTGCAGCATCTATAT
CATTCAACCCAAGGGCCTTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019