Detail information of BGIOSGA031634_circ_igg.1


General Information
CircRNA Name BGIOSGA031634_circ_igg.1
ID in PlantcircBase osi_circ_002871
Alias 10:17570749|17570944
Organism Oryza sativa ssp. indica
Position chr10: 17570749-17570944  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA031636_circ_ag.1 BGIOSGA031636_circ_ag.2 BGIOSGA031634_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGGTCTGAAATACTCGAGCCTTGACATCTGTGATGATTGCTTCTGCTTCGTACTTCGCCAGTC
CAAATATATTCCTCAGTTGATTCAAAGCCGCAAGttgcaagttgagaggatcaaattgcaactc
ttcgcagatatcttggaggaactctgccttctttggggtcgcagccaactcattgttaaagaat
ttag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGCAAGTTGAGAGGATCAAATTGCAACTCTTCGCAGATATCTTGGAGGAACTCTGCCTTCTTT
GGGGTCGCAGCCAACTCATTGTTAAAGAATTTAGTAGGTCTGAAATACTCGAGCCTTGACATCT
GTGATGATTGCTTCTGCTTCGTACTTCGCCAGTCCAAATATATTCCTCAGTTGATTCAAAGCCG
CAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021