Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d019907_circ_g.4 |
ID in PlantcircBase | zma_circ_009287 |
Alias | Zm07circ00037, GRMZM2G013794_C2 |
Organism | Zea mays |
Position | chr7: 74622401-74634183 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d019907 |
Parent gene annotation |
Histone-lysine N-methyltransferase ATX2 |
Parent gene strand | - |
Alternative splicing | Zm00001d019907_circ_g.1 Zm00001d019907_circ_g.2 Zm00001d019907_circ_g.3 Zm00001d019907_circ_g.5 Zm00001d019907_circ_g.6 Zm00001d019907_circ_g.7 Zm00001d019907_circ_g.8 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d019907_T020:4 Zm00001d019907_T012:4 Zm00001d019907_T044:4 Zm00001d019907_T003:4 Zm00001d019907_T013:4 Zm00001d019907_T034:4 Zm00001d019907_T005:4 Zm00001d019907_T046:4 Zm00001d019907_T032:4 Zm00001d019907_T036:4 Zm00001d019907_T035:4 Zm00001d019907_T019:4 Zm00001d019907_T024:3 Zm00001d019907_T028:4 Zm00001d019907_T001:4 Zm00001d019907_T009:4 Zm00001d019907_T047:4 Zm00001d019907_T004:4 Zm00001d019907_T042:4 Zm00001d019907_T039:3 Zm00001d019907_T029:4 Zm00001d019907_T022:4 Zm00001d019907_T033:3 Zm00001d019907_T041:4 Zm00001d019907_T018:4 Zm00001d019907_T002:4 Zm00001d019907_T031:4 Zm00001d019907_T043:4 Zm00001d019907_T015:4 Zm00001d019907_T016:4 Zm00001d019907_T006:4 Zm00001d019907_T025:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.124127732 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
74622481-74634178(-) |
Potential amino acid sequence |
MMLRQRNSRLKSELREVNYLKKVKSKDG*(-) |
Sponge-miRNAs | zma-miR2275a-5p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |