Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d019907_circ_g.3 |
ID in PlantcircBase | zma_circ_009286 |
Alias | zma_circ_0002741, GRMZM2G013794_C1 |
Organism | Zea mays |
Position | chr7: 74622401-74623402 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d019907 |
Parent gene annotation |
Histone-lysine N-methyltransferase ATX2 |
Parent gene strand | - |
Alternative splicing | Zm00001d019907_circ_g.1 Zm00001d019907_circ_g.2 Zm00001d019907_circ_g.4 Zm00001d019907_circ_g.5 Zm00001d019907_circ_g.6 Zm00001d019907_circ_g.7 Zm00001d019907_circ_g.8 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d019907_T015:3 Zm00001d019907_T033:2 Zm00001d019907_T003:3 Zm00001d019907_T016:3 Zm00001d019907_T039:2 Zm00001d019907_T005:3 Zm00001d019907_T042:3 Zm00001d019907_T012:3 Zm00001d019907_T031:3 Zm00001d019907_T002:3 Zm00001d019907_T041:3 Zm00001d019907_T022:3 Zm00001d019907_T024:2 Zm00001d019907_T034:3 Zm00001d019907_T006:3 Zm00001d019907_T018:3 Zm00001d019907_T013:3 Zm00001d019907_T044:3 Zm00001d019907_T009:3 Zm00001d019907_T020:3 Zm00001d019907_T004:3 Zm00001d019907_T036:3 Zm00001d019907_T029:3 Zm00001d019907_T043:3 Zm00001d019907_T046:3 Zm00001d019907_T047:3 Zm00001d019907_T025:3 Zm00001d019907_T028:3 Zm00001d019907_T035:3 Zm00001d019907_T032:3 Zm00001d019907_T001:3 Zm00001d019907_T019:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.161521693 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
74622481-74623373(-) |
Potential amino acid sequence |
MMLRQRNSRLKSELREVNYLKKVKSKGCWDIYVQDR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |