Detail information of Os12g0129000_circ_g.1


General Information
CircRNA Name Os12g0129000_circ_g.1
ID in PlantcircBase osa_circ_010415
Alias NA
Organism Oryza sativa
Position chr12: 1388836-1390995  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os12g0129000
Parent gene annotation Uncharacterised protein family UPF0414 domain containing protein
. (Os12t0129000-01)
Parent gene strand -
Alternative splicing Os12g0128700_circ_g.1 Os12g0128700_circ_g.2 Os12g0128700_circ_g.3 Os12g0128700_circ_igg.1 Os12g0128700_circ_g.2 Os12g0128700_circ_ag.1 Os12g0128700_circ_g.2 Os12g0128700_circ_g.3 Os12g0128700_circ_g.4 Os12g0128800_circ_g.1 Os12g0128800_circ_g.2 Os12g0129000_circ_g.2 Os12g0129300_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACCTAATATCAACAAGGCAATATCACAAGAAACCTCTCAAACGAATTTCTATATGAGGGATG
TCCAGCAATCAAATGCCATAAACGAATTTTTGTTACtgtaaaatacatgtagaaaatgacatgg
taatacacagtaagatctaagagttcaattgacaaagaaaagttgaaatccacagttgctgcta
atgataat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTAAAATACATGTAGAAAATGACATGGTAATACACAGTAAGATCTAAGAGTTCAATTGACAAA
GAAAAGTTGAAATCCACAGTTGCTGCTAATGATAATAAAAAATTACAAGCTTTGAAAAAATAAG
GTGCACCAAACAGTAACAGAGATGATATGACAAACAAAACTAAGGTTGTGGTTGCCGTCGCATG
TGCCATGCCAAGGGCCTTAATGGACTGCATGTGACATGGGCATCACAAATTTCATGTGAATCAT
TCTCAGAAAAGAACTAATAGTTTTTATAGAATGATTAGCAAAATATAAGAAAAAATTTTCTGTA
ATGCGACATGTAATTTGAAGCCAACTCAAAGAACAGAATCAAAGACAAGAACAGGATGGCATAC
CAGACAGATTTTTTCTCTAGGTTGTTGCATATATCAAATAAAACCTTATGCAACAAGATGCGTA
TTAAAAGCTTTGATCATCTACAATCATCTGCACGAACTAAGGCTAAAATGAGCAATCTATTCTA
CAGGATAACAATCAGAAAATATGGGCTAAACAAGACACATCTACCCTGACCTCCGAACACAAGT
ACTAACAAAATATGGAGTACATTAGTACCTTGATGTGCAAATTAGTTAGAATCTGAAATAGTAC
TAACAAAACATGAATACCTCAGATTTTTATATCTGAAAAAACACCTCAAAATATACTAGTCTTT
AGAACCTTTCCAAAACTGTATCTTAGTTCTGTATACTCCTACATTATAGCCAAGAAAATCATAC
CAGCAGCCTACTGTTAGTAAGAATCACCAATCTGAGCCTTTATATGTCTCCTAGCTCTGAACCA
GATCTATAGAAGAGGGAAAACGAATTACAGGCAAGTCAGCAAAACTGGTCCGAGTGGTAAACAA
ATCACAGAAAGAAATCAGAAGAGACAGGGGTGGCAACACCAACGCTTGTCTCAGGAAAGGATTG
AAGGAACGAGGAGGTCTGGGGGAAATAGAAGAGGAACAGGCGAGGACGAGAGCACGTCTGGAGA
CTGGAGTGACGTGTCCTCTCCCTTGATCCTGATTTCCTTCGGTAGCCATACTGTTGGCCCGATT
GGACCTTTATTATCATGCATATAGAGGTACCATCTATGGGCTTGGAGCCCCTAACTAATGGGGG
TCCAGATCGGTCGTCCTTACTGACCTGCCTCAGGGCCAGCCCTGTGAACTTCACAAGTTTATAA
ACATCGAGCAGCAAAATATCATTTAATTAACATAAAAAAAAGGAAAACCCTACAATAACTTATA
ATTCTCCAGGTAAGGACCTTCTGACCCCTTCCCCCCCTCTTTTTTTTTGTTTCTTTTTTGCAAG
TAGCAGGGCAGAATGTGATAGAAGAGAAAAACAGTAATAGGATCATAGTACCAGTGGCTGACTT
GCAAGAAACCAAACTTTTTGCAGGCACAATAAATCCATCTAAAATTCAGGAGCCTAATCTTTGG
GACTAGAACCGATGAGTGAGTATTCCTAAAAAAGATGGAGTTGTACAGTTTTTATTACTCGACC
ATGGAAGATCACAAAGACACAGAAGTTAGTATGGTTCAAGGGCGCATCTGCTATAATGTGAGAG
TCCAAGATTTTGCTACCCCTGGGCTAACAGTACAGTGTTCTAGGCTTAATTTTGGCAAAAAAAA
AAAAGGAAAGAAAAGAAAAAAAAACACAGATAGCAGCCTCTGAGATTTGACGAATATTGTCAAT
TTACAGTGCTTAGATTACTTTTAGTTTTTCCGATGACGGTGCTTAGACTACAAGCCGGCTGTAC
AATGGAGTCATACAAGATTATGGGTTCAGTCTTAATAGTAACTCTTCAACTCTGAGGCTAAAAA
CCTAAACAAGCAAATGCTCAACATAATAAACATAAAAATAAAGGATCGAACTATGCTTTGAGCA
ACAAATTATATTGTACATTTGGCATCATATCAGCTTGTCGTGGGGCAAGGAAAACATACAAAAT
CTTGTAATTTCACAGGCAAAATGTTCATTCTCTAGTTCGTTCAGACAGAAAGGTGTTAAATTCA
ATCGTAATGGTCATACCTAATATCAACAAGGCAATATCACAAGAAACCTCTCAAACGAATTTCT
ATATGAGGGATGTCCAGCAATCAAATGCCATAAACGAATTTTTGTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.0978786
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017