Detail information of Os10g0500600_circ_g.2


General Information
CircRNA Name Os10g0500600_circ_g.2
ID in PlantcircBase osa_circ_007487
Alias Os_ciR6824
Organism Oryza sativa
Position chr10: 19094077-19094265  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os10g0500600
Parent gene annotation Zinc finger, C2H2-like domain containing protein. (Os10t0500600-
01);Similar to predicted protein. (Os10t0500600-02)
Parent gene strand +
Alternative splicing EPlOSAG00000049343_circ_igg.1 EPlOSAG00000049343_circ_igg.2 EPlOSAG00000010307_circ_g.1 EPlOSAG00000049343_circ_g.1 EPlOSAG00000049343_circ_g.2 EPlOSAG00000049343_circ_g.3 EPlOSAG00000049343_circ_g.4 EPlOSAG00000049343_circ_g.5 EPlOSAG00000049343_circ_g.6 EPlOSAG00000049343_circ_g.7 EPlOSAG00000049343_circ_g.8 EPlOSAG00000049343_circ_g.9 EPlOSAG00000049343_circ_g.10 EPlOSAG00000049343_circ_g.11 EPlOSAG00000049343_circ_g.12 EPlOSAG00000049343_circ_g.13 EPlOSAG00000049343_circ_g.14 EPlOSAG00000049343_circ_g.15 EPlOSAG00000049343_circ_g.16 EPlOSAG00000049343_circ_g.17 EPlOSAG00000049343_circ_g.18 EPlOSAG00000049343_circ_g.19 EPlOSAG00000049343_circ_g.20 EPlOSAG00000049343_circ_g.21 EPlOSAG00000049343_circ_g.22 EPlOSAG00000049343_circ_g.23 EPlOSAG00000049343_circ_g.24 EPlOSAG00000049343_circ_g.25 EPlOSAG00000049343_circ_g.26 EPlOSAG00000049343_circ_g.27 EPlOSAG00000049343_circ_g.28 EPlOSAG00000049343_circ_g.29 EPlOSAG00000049343_circ_g.30 EPlOSAG00000049343_circ_g.31 EPlOSAG00000049343_circ_g.32 EPlOSAG00000049343_circ_g.33 EPlOSAG00000049343_circ_g.34 EPlOSAG00000049343_circ_g.35 EPlOSAG00000049343_circ_g.36 EPlOSAG00000049343_circ_igg.37 EPlOSAG00000049343_circ_g.38 EPlOSAG00000049343_circ_g.39 EPlOSAG00000049343_circ_g.40 EPlOSAG00000049343_circ_g.41 EPlOSAG00000049343_circ_g.42 EPlOSAG00000049343_circ_g.43 EPlOSAG00000049343_circ_g.44 EPlOSAG00000049343_circ_g.45 EPlOSAG00000049343_circ_g.46 EPlOSAG00000049343_circ_g.47 EPlOSAG00000049343_circ_g.48 EPlOSAG00000049343_circ_g.49 EPlOSAG00000049343_circ_g.50 EPlOSAG00000049343_circ_g.51 EPlOSAG00000049343_circ_g.52 EPlOSAG00000049343_circ_g.53 EPlOSAG00000049343_circ_g.54 EPlOSAG00000049343_circ_g.55 EPlOSAG00000049343_circ_g.56 EPlOSAG00000049343_circ_g.57 EPlOSAG00000049343_circ_g.58 EPlOSAG00000049343_circ_g.59 EPlOSAG00000049343_circ_g.60 EPlOSAG00000049343_circ_g.61 EPlOSAG00000049343_circ_g.62 EPlOSAG00000049343_circ_g.63 EPlOSAG00000049343_circ_g.64 EPlOSAG00000049343_circ_g.65 EPlOSAG00000049343_circ_g.66 EPlOSAG00000049343_circ_g.67 EPlOSAG00000049343_circ_g.68 EPlOSAG00000049343_circ_g.69 EPlOSAG00000049343_circ_g.70 EPlOSAG00000049343_circ_g.71 EPlOSAG00000049343_circ_g.72 EPlOSAG00000049343_circ_g.73 EPlOSAG00000049343_circ_g.74 EPlOSAG00000049343_circ_g.75 EPlOSAG00000049343_circ_g.76 EPlOSAG00000049343_circ_g.77 EPlOSAG00000049343_circ_g.78 EPlOSAG00000049343_circ_g.79 EPlOSAG00000049343_circ_g.80 EPlOSAG00000049343_circ_g.81 EPlOSAG00000049343_circ_g.82 EPlOSAG00000049343_circ_g.83 EPlOSAG00000049343_circ_ag.1 EPlOSAG00000049343_circ_g.2 EPlOSAG00000049343_circ_g.3 EPlOSAG00000049343_circ_g.4 EPlOSAG00000049343_circ_g.5 EPlOSAG00000049343_circ_g.6 EPlOSAG00000049343_circ_g.7 EPlOSAG00000049343_circ_g.8 EPlOSAG00000049343_circ_g.9 EPlOSAG00000049343_circ_g.10 EPlOSAG00000049343_circ_g.11 EPlOSAG00000049343_circ_g.12 EPlOSAG00000049343_circ_g.13 EPlOSAG00000049343_circ_g.14 EPlOSAG00000049343_circ_g.15 EPlOSAG00000049343_circ_g.16 EPlOSAG00000049343_circ_g.17 EPlOSAG00000049343_circ_g.18 EPlOSAG00000049343_circ_g.19 EPlOSAG00000049343_circ_g.20 EPlOSAG00000049343_circ_g.21 EPlOSAG00000049343_circ_g.22 EPlOSAG00000049343_circ_g.23 EPlOSAG00000049343_circ_g.24 EPlOSAG00000049343_circ_g.25 EPlOSAG00000049343_circ_g.26 EPlOSAG00000049343_circ_g.27 EPlOSAG00000049343_circ_g.28 EPlOSAG00000049343_circ_g.29 EPlOSAG00000049343_circ_g.30 EPlOSAG00000049343_circ_g.31 EPlOSAG00000049343_circ_g.32 EPlOSAG00000049343_circ_g.33 EPlOSAG00000049343_circ_g.34 EPlOSAG00000049343_circ_g.35 EPlOSAG00000049343_circ_g.36 EPlOSAG00000049343_circ_g.37 EPlOSAG00000049343_circ_g.38 EPlOSAG00000049343_circ_g.39 EPlOSAG00000049343_circ_g.40 EPlOSAG00000049343_circ_g.41 EPlOSAG00000049343_circ_g.42 EPlOSAG00000049343_circ_g.43 EPlOSAG00000049343_circ_g.44 EPlOSAG00000049343_circ_g.45 EPlOSAG00000049343_circ_g.46 EPlOSAG00000049343_circ_g.47 EPlOSAG00000049343_circ_g.48 EPlOSAG00000049343_circ_g.49 EPlOSAG00000049343_circ_g.50 EPlOSAG00000049343_circ_g.51 EPlOSAG00000049343_circ_igg.52 Os10g0499600_circ_g.1 Os10g0499600_circ_g.2 Os10g0500300_circ_g.1 Os10g0500300_circ_g.2 Os10g0500600_circ_g.1 Os10g0500700_circ_g.1 Os10g0500700_circ_g.2 Os10g0500700_circ_g.3 Os10g0500700_circ_g.4 Os10g0500700_circ_g.5 Os10g0500700_circ_g.6 Os10g0500700_circ_g.7 Os10g0500700_circ_g.8 Os10g0501000_circ_ag.1 Os10g0501500_circ_g.1 Os10g0501500_circ_g.2 EPlOSAG00000049332_circ_g.1 EPlOSAG00000049332_circ_g.2 EPlOSAG00000049332_circ_g.3 EPlOSAG00000049332_circ_g.4 EPlOSAG00000049332_circ_g.5 EPlOSAG00000049332_circ_g.6 EPlOSAG00000049332_circ_g.7 EPlOSAG00000049332_circ_g.8 EPlOSAG00000049332_circ_g.9 EPlOSAG00000049332_circ_g.10 EPlOSAG00000049332_circ_g.11 EPlOSAG00000049332_circ_g.12 EPlOSAG00000049332_circ_g.13 EPlOSAG00000049332_circ_g.14 EPlOSAG00000049332_circ_g.15 EPlOSAG00000049332_circ_g.16 EPlOSAG00000049332_circ_g.17 EPlOSAG00000049332_circ_g.18 EPlOSAG00000049332_circ_g.19 EPlOSAG00000049332_circ_g.20 EPlOSAG00000049332_circ_g.21 EPlOSAG00000049332_circ_g.22 EPlOSAG00000049332_circ_g.23 EPlOSAG00000049332_circ_g.24 EPlOSAG00000049332_circ_g.25 EPlOSAG00000049332_circ_g.26 EPlOSAG00000049332_circ_g.27 EPlOSAG00000049332_circ_g.28 EPlOSAG00000049332_circ_g.29 EPlOSAG00000049332_circ_g.30 EPlOSAG00000049332_circ_g.31 EPlOSAG00000049332_circ_g.32 EPlOSAG00000049332_circ_g.33 EPlOSAG00000049332_circ_g.34 EPlOSAG00000049332_circ_g.35 EPlOSAG00000049332_circ_g.36 EPlOSAG00000049332_circ_g.37 EPlOSAG00000049332_circ_g.38 EPlOSAG00000049332_circ_g.39 EPlOSAG00000049332_circ_g.40 EPlOSAG00000049332_circ_g.41 EPlOSAG00000049332_circ_g.42 EPlOSAG00000049332_circ_g.43 EPlOSAG00000049332_circ_g.44 EPlOSAG00000049332_circ_g.45 EPlOSAG00000049332_circ_g.46 EPlOSAG00000049332_circ_g.47 EPlOSAG00000049332_circ_g.48 EPlOSAG00000049332_circ_g.49 EPlOSAG00000049332_circ_g.50 EPlOSAG00000049332_circ_g.51 EPlOSAG00000049332_circ_g.52 EPlOSAG00000049332_circ_g.53 EPlOSAG00000049332_circ_g.54 EPlOSAG00000049332_circ_g.55 EPlOSAG00000049332_circ_g.56 EPlOSAG00000049332_circ_g.57 EPlOSAG00000049332_circ_g.58 EPlOSAG00000049332_circ_g.59 EPlOSAG00000049332_circ_g.60 EPlOSAG00000049332_circ_g.61 EPlOSAG00000049332_circ_g.62 EPlOSAG00000049332_circ_g.63 EPlOSAG00000049332_circ_g.64 EPlOSAG00000049332_circ_g.65 EPlOSAG00000049332_circ_g.66 EPlOSAG00000049332_circ_g.67
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os10t0500600-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAGAGGAGTCGAATGAGCAAAGCAGCTCCGCCCATGACAATAGCCAAGCTATCATAACAGGT
TCCCCGACAGGTACTTCACACAATCTTCAAgaccttcctatctctgctggatctttcttcgtga
ttgatgatgctggacaccgtggaaagagaagaaagaagtcattttcagatcaagaagcatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACCTTCCTATCTCTGCTGGATCTTTCTTCGTGATTGATGATGCTGGACACCGTGGAAAGAGAA
GAAAGAAGTCATTTTCAGATCAAGAAGCATCTTCAGAGGAGTCGAATGAGCAAAGCAGCTCCGC
CCATGACAATAGCCAAGCTATCATAACAGGTTCCCCGACAGGTACTTCACACAATCTTCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.266117989
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015