Detail information of Os08g0162100_circ_g.12


General Information
CircRNA Name Os08g0162100_circ_g.12
ID in PlantcircBase osa_circ_036010
Alias NA
Organism Oryza sativa
Position chr8: 3670591-3674258  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0162100
Parent gene annotation Transcriptional co-repressor, Regulation of meristem fate (Os08t
0162100-01);Similar to predicted protein. (Os08t0162100-02)
Parent gene strand +
Alternative splicing Os08g0162100_circ_g.2 Os08g0162100_circ_g.3 Os08g0162100_circ_g.4 Os08g0162100_circ_g.5 Os08g0162100_circ_g.6 Os08g0162100_circ_g.7 Os08g0162100_circ_g.8 Os08g0162100_circ_g.9 Os08g0162100_circ_g.10 Os08g0162100_circ_g.11 Os08g0162100_circ_g.13 Os08g0162100_circ_g.14 Os08g0162100_circ_g.15 Os08g0162100_circ_g.16 Os08g0162100_circ_g.17 Os08g0162100_circ_g.18 Os08g0162100_circ_g.19 Os08g0162100_circ_g.20 Os08g0162100_circ_g.21 Os08g0162100_circ_g.22
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0162100-02:6
Os08t0162100-01:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGGTTAAAAGCAAGCTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTTTCGCAGTCA
ATGAATATGCTTGTATCTTCAGGTGCTGATGCTCAGgtgttgctttttcaaagcatattgttca
gacgtatgcattcgtgctcaatggagaattgcggcagcaagcagaggtatatccatacatggat
gcttctta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTTGCTTTTTCAAAGCATATTGTTCAGACGTATGCATTCGTGCTCAATGGAGAATTGCGGCA
GCAAGCAGAGGTATATCCATACATGGATGCTTCTTAAGAATAAATATGAATGCCTTTTGCATGT
TTGGATTAGTGGGATGGGATTTTGTTCAATGCTGCTCATCGAAACACTTCCTGAAAGGTTTCTA
ACTCTTGCAAATGGCACAGATTGATGCCCACATTGGTGGGGTTAATGATATTGCCTTCTCTCAC
CCCAACAAGACCCTCTCAATTATTACTTGTGGTGATGATAAACTAATTAAGGTGAGGTCGTTGA
TATGATACACTGCTTCACCCTTTCTTGAGAAAAAGAAATGAACACCATATTCATATGATACATT
GCTTTATCCTCTTGAAAAAATGAACCATGGATGCACATTTGATTTTGGCAGGTATGGGATGCTC
AGACAGGACAAAAGCAGTACACATTTGAAGGTCACGAAGCTCCAGTATATTCTGTTTGCCCTCA
CTACAAGGAGTCAATTCAGGTATTTCAGGAATACTTCAATTTACTTTCTTAGGATATGCTTCTG
CCGTTTTAATTTGCAATGCGTTGTGGATCTAATCTTTCTGGTTAGTGCATTTCATTGCCATTTT
CATGATAAATATGCTTATTGCATTCTTGGTTAGCATTAGTATTGCATGTTGATTTGCTTTGATT
TTGACATATGCAAAGGTAGACTATGTATTATCTTTTCTACTATTATCTGTTATATCCAATGCAT
TTCTTTAACATTCGTTTTCTTTGCAGTTTATATTCTCTACTGCCATCGATGGGAAAATTAAGGC
ATGGTTATATGACTGTTTGGGCTCAAGGGTTGACTATGATGCTCCTGGACATTGGTGTACTACC
ATGGCTTACAGTGCTGATGGAACAAGGTGATGAGACACTGCAAATGAATATCAGCTGCTAATTG
TTCAAGACAATAATATAGTTTCTAAACCTTCACAAATTAAGTGAATATATTGAATAAATAGTAT
AGTTGTCAGGCAGGAACAAATTAAAATGAGAATATGTTGCAGGGTGAAGGATATACATTTTATC
GTAGCTTCTCTAGTTGCAATTTGTTTTGTCACTCCATTTCACACTTTGTATCTGTGCGAGTTGT
TTGATTGTAAATTTTCCCTGCAGGCTCTTCTCATGTGGTACTAGCAAAGATGGTGATTCACACT
TGGTTGAGTGGAATGAGACTGAGGGAGCTATTAAGAGGACATACAATGGTTTCAGGAAGCGCTC
ACTGGGTGTTGTCCAGTTTGATACAACAAGAAACCGCTTCTTGGCTGCTGGAGATGAATTCGTT
GTTAAATTCTGGGATATGGATAACACCAACATACTTACAACAACAGATTGTGACGGTGGACTGC
CTGTTAGTATAGTTTCTCCTAGTATCATGTTGTCGGAATCATCTACACTTAAGGTTTTGTGCTT
AACCTCATGCTAATAATTTTGCAGGCGAGCCCACGCTTGAGATTCAACAGAGAAGGTTCATTGC
TTGCTGTTACAGCAAATGAAAATGGAATAAAAATATTAGCCAACACTGATGGACAGCGTTTGCT
AAGGATGCTAGAGAGCAGAGCATATGAGGGCTCTCGAGGGCCACCTCAACAAATTAATACCAAG
GTATTGATGCATATACTTACCATTTTTTTAATGTTCCCTTAAATCCTAGTGTCATTAGGGTATA
AAGATAACATTGATTCGCGTATTCGGAAAAAAAGATAACATTGTTTCTGTTCTCTATTATAACC
TTGTTTTCTGATATATCTTTTTTTTTGGTTCCGTCATCTGAAAACTGGTTTGGGCCTATGGCTG
TTTCCTGTTTTCTGAAGCTTCAAAACCACTAGTATCTATTCGTTTGTAAGATGCAGCACGGTGT
TCTGGGCAACTGTTTAGACTTTAGTTAGTTTCAATCAAGCTGCCTTGTGTTATTTTCAGTGCTG
GCTGATAATGTTGACTATAACCTCATTTTTGTTCTTATTGTAGCCCCCAATTGTCAACACCCTT
GGTTCTGTTTCCAATGTGTCTAGTCCTATGGCAGTGAATTCGGAGAGACCTGATCGGGCATTGC
CCACAGTGTCAATGAGTGGCCTGGTGAGTTTGCAGAATCTATTTTGTTGTCTGCTCACTGTTCA
ATACTTCAACCTGTTCTGTTGCTAAATGCATCAAACAAATACCAGGCGCCCATGGATGTTAGCA
GAACCCCAGATGTTAAGCCAAGAATTACAGATGAATCTGAAAAGGTTAAAACCTGGAAGTTGGC
AGACATTGGTGACTCAGGACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGC
AAAGTATGTTGAACAATGTGTGCTTGGTTGCTATCAAGTCTGTTGAGTTATAAATATTGATCAT
GCAATAATAACCTGATTACCTTAAACATATGAGCTTGTCTTTCTGTTTAATGTCTGGAAGACCG
CAGTATCTGTTGGTGTTTACATGCAATTGTTGCACAAATGTCAAGTTTTGACCTTTTTTTGTCA
ACATTTGATAGGATCTTTTTTCAGTGATAGAACAGGCTGTTCAGTTCTGAGCAATATGAAATTT
CTGATAAGCACTGTAATTTTTTTTTGTTGCACAGGTTGTGCGTCTGCTGTATACAAATAATGGG
GTTGCGCTTTTGGCTCTTGGCTCTAATGCTGTTCATAAGCTGTGGAAATGGCAACGCACTGATA
GGAATCCTAATGGCAAGGTTAGAGTGGAGAGTTGTTCTTATTTGGATTTCATCTGTTCTTATTT
GGATTTCATCTGCTATTCTGTTTGCTTGGTTTCTAAATATATGCATATATTGTAGTCCACTGCA
TCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTTATGGCAAATGACACTAGTGATG
GCAACCCCGAAGAAGCAACTGCCTGCATTGCTCTGTCCAAAAATGATTCCTATGTGATGTCTGC
ATCCGGTGGCAAAGTCTCATTGTTCAACATGATGACATTCAAGGTATATGATCTCTTCGGTGTG
TAGCACAATCAATTGTTATTACCCTAGAGCATAGGTCATGAGTTACTTTCCATAAAAATATGTG
TTATTCTATAGTTGTGACGTTAAAATTTTTGAATTTTTTCACAGGTCATGACTACTTTCATGGC
ACCTCCACCTGCTGCAACTTTCCTTGCATTCCACCCTCAAGACAATAATATCATTGCTATTGGA
ATGGAGGACTCTACCATTCAAATTTATAATGTCCGTGTTGACGAGGTGAGTGATATTCTCTTAA
TGGTTCTCACCGCAAGTGATTAAACTAGTCAAATAATGTTTCTCATTTCCTCTTACCAGATGAA
TCAGATCTTGTGAGATTTTGTAGATGACGTTTTAGATATATGTATTTTTTTTTTTACTTATAAA
CCTTATGTGCAATAGAAATGCTCAGTGACCTTCAACTAACTGAAGATTAAAATTTAAACAGCTG
AGAACTTGTTTCAGTGATAATTGATTCCTTCTGTCTTAACCATATGGCATAGGTTAAAAGCAAG
CTTAAGGGACATTCAAAAAAGATCACTGGGCTGGCATTTTCGCAGTCAATGAATATGCTTGTAT
CTTCAGGTGCTGATGCTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.132202719
Functional Information
Coding potential Y
Potential coding position 3674252-3670803(+)
3671488-3670889(+)
Potential amino acid sequence MLRCCFFKAYCSDVCIRAQWRIAAASRD*(+)
MAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEF
VVKFWDMDNTNILTTTDCDGGLPASPRLRFNREGSLLAVTANENGIKILANTDGQRLLRMLESR
AYEGSRGPPQQINTKPPIVNTLGSVSNVSSPMAVNSERPDRALPTVSMSGLAPMDVSRTPDVKP
RITDESEKVKTWKLADIGDSGHLRALRMPDTSATSSKVVRLLYTNNGVALLALGSNAVHKLWKW
QRTDRNPNGKSTASFTPQMWQPANGILMANDTSDGNPEEATACIALSKNDSYVMSASGGKVSLF
NMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHSKKITGL
AFSQSMNMLVSSGADAQVLLFQSILFRRMHSCSMENCGSKQRLMPTLVGLMILPSLTPTRPSQL
LLVVMIN*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017