Detail information of Os08g0162100_circ_g.2


General Information
CircRNA Name Os08g0162100_circ_g.2
ID in PlantcircBase osa_circ_036000
Alias NA
Organism Oryza sativa
Position chr8: 3667838-3671121  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0162100
Parent gene annotation Transcriptional co-repressor, Regulation of meristem fate (Os08t
0162100-01);Similar to predicted protein. (Os08t0162100-02)
Parent gene strand +
Alternative splicing Os08g0162100_circ_g.3 Os08g0162100_circ_g.4 Os08g0162100_circ_g.5 Os08g0162100_circ_g.6 Os08g0162100_circ_g.7 Os08g0162100_circ_g.8 Os08g0162100_circ_g.9 Os08g0162100_circ_g.10 Os08g0162100_circ_g.11 Os08g0162100_circ_g.12 Os08g0162100_circ_g.13 Os08g0162100_circ_g.14 Os08g0162100_circ_g.15 Os08g0162100_circ_g.16 Os08g0162100_circ_g.17 Os08g0162100_circ_g.18 Os08g0162100_circ_g.19 Os08g0162100_circ_g.20 Os08g0162100_circ_g.21 Os08g0162100_circ_g.22
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0162100-01:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGGTATGGGATGCTCAGACAGGACAAAAGCAGTACACATTTGAAGGTCACGAAGCTCCAGTA
TATTCTGTTTGCCCTCACTACAAGGAGTCAATTCAGgttggagcaggagtcggccttctacttc
aacatgaagcactttgaagacctggtgcagggaggggagtgggacgaggtggagaagtacctca
gcgggttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGAGCAGGAGTCGGCCTTCTACTTCAACATGAAGCACTTTGAAGACCTGGTGCAGGGAGGG
GAGTGGGACGAGGTGGAGAAGTACCTCAGCGGGTTCACCAAGGTGGAGGACAACCGCTACTCCA
TGAAAATATTCTTCGAGATCCGGAAGCAGAAGTACCTCGAAGCCCTTGACAGGTAATTCATTGG
AAGCTTGTAATGGTGGTTGGCTGATGGCAACGTGAAATTGTGCTGAGTTGGATTTTGTTTTTTG
GTTGCAGGCATGATCGAGCCAAGGCGGTGGAGATACTCGTGAAGGATCTCAAGGTGTTTGCCTC
ATTCAATGAGGAGCTGTTCAAGGAGATAACACAGCTGCTGACGTTGGAGAATTTTAGGTATGTT
GGTGATGATTAGTTTATAGCATTTTGATTGAGTAAAATGCCCAGTGCATTGGAGTAAGATAAAT
GTGATAGTGTATTAATGATGAACACTTGAACAGGCAAAATGAGCAGCTGTCCAAGTATGGGGAC
ACAAAGTCAGCTCGGAATATCATGCTCATGGAGCTCAAGAAGCTTATTGAGGCAAACCCACTGT
TTCGGGACAAGCTGAATTTCCCACCATTTAAAGTTTCAAGACTCCGCACATTAATCAATCAAAG
GTGTTTGGTTGATTTAAGTTTTGGCATGTTTTTAAATTCTGTCTTTTTTGTTTTCTCAGGGATG
TGATCTGCATGAACAACAATGTTAATATTCAAATAGGAAATGCTCCGTGAGCCGCATTAAATTC
GCATAATGCCAGCTTAAGGTTTCAGTGGCACATATATTCGTGTATATATGCTTTTGTGTTTGGA
AAAGAATTTGTCACCGAAATGATATAGGTGGTTTAGTTTTCTGTCTGGTCACAATACCATCTTT
GCTTGGCAACGATGAATACGTAAGGAAGAGGCGTGTGTTGTTTATATATGGAAACTACACGGCT
TTTTAAGCATCTAACAGCTTTTAGGTGACATTTATAGTTCTTGATTGTCCAGTAATGAATGGGC
ATGCTCCAACCAATATGTTCGGAAATTATGAGTGATGTTTGCCTACATACATTTATCTCTCCCA
ATTAGCATGCTCTAATGGAATACGCCAAATATGCTGAGGTTAAATAGTATAGTAATAAATTATG
TTTTTTCAGTGTTCTTTTCTAACTATTGATGCTCATGTGGATCTCCTATTTGATATTTTTCATC
ATCAACTACTTTGTGTTTTGCTGTTCCGTAATGTAGACCTGTTAGGTTTTCTCTATGAATTATC
TTCCTTCAGTTTCTTGTAAAAGCATGATGCTAATTGGGGTGCGTTTCTTTCTTATGTCTTGTAG
TCTTAACTGGCAACATCAGCTATGCAAGAATCCCAGACCAAACCCTGACATCAAGACACTGTTT
ACCGATCATTCTTGTGCCGCTCCTACCAATGGAGCAAGAGCTCCTCCCCCTGCTAATGGGCCTC
TTGTTGGACCAATCCCTAAGTCAGCTGCATTTCCTCCAATGGGTGCTCATGCGGTAAGGATTAG
ATTACTACCAGTAAATAGTGCATTTTATTTTACACTCATCTGTTACTCAAGTTTCAATCTTGAT
TCTTGCAGCCATTTCAACCTGTGGTGTCACCATCTCCAAATGCAATTGCGGGTTGGATGACAAA
TGCGAACCCCTCTTTGCCACATGCTGCAGTCGCACAAGGACCACCTGGTCTTGTTCAACCTCCA
AACACAGGTGAGATAAACCTAAAGTAATTCAGCTAACTGGTTGCTGTCACTGGTAGCATTGAGT
TTGACTGTTTGCTTGGATTATATATCTCCTTTGCAGCGGCATTTCTAAAACATCCAAGGACTCC
AACAAGTGCTCCTGCCATTGATTATCAATCTGCGGATTCTGAACATCTGATGAAAAGAATGCGT
GTAGGCCAACCAGATGAGGTATCTAATGATTTTGCATTTATTGTGTTTATCCTCTTCACTATTG
TCTGCAGATTTGCATGCTAAATAAATTACGATGCATTGAAAACTATGCTAGGTGTCCTTCTCTG
GTGCAAGCCACCCTGCCAACATTTATACTCAAGATGACCTTCCAAAACAAGTTGTTCGCAACCT
TAACCAGGGTTCAAATGTTATGAGCCTGGATTTCCATCCTGTTCAACAAACCATCCTTCTAGGT
ACATACTGGAAACACATCTGTTCGTTTTCTTTTAAAACTCTTTGTCCATGTTCTGTCCACTATA
TTTACTGTGTTCTTGACTTCTCGTGTAACACAGTTGGAACAAATGTTGGTGACATTGGGATATG
GGAAGTTGGCTCACGAGAAAGGATAGCTCACAAGACATTCAAAGTTTGGGATATTAGTTCTTGC
ACCTTGCCTTTGCAGGTGACTTGCATGATATTCTTGATCTATTTTTGTGCACTAATTACCTTCT
TTTGTTCTTCTACTAGCAGTATGCCGTTTTCTTCTTGTGATGTATTCTAATGCTCAATCTGTCT
TACCATGTCCAGGCTGCACTGATGAAAGATGCTGCAATATCTGTCAATAGATGCCTGTGGAGTC
CTGATGGAAGTATTTTAGGTCAGAAGATCTGTTCATTGTGGTATCATTCACATTTTGGCATGCC
ATCTTAGATAAATGCAACATTTGTGCATTGCTCTGACTTGTAGTGTTTTGTTTTAATGTTTCCT
CGGGTGGAGAGATTGAATTACCCCCGTCTGCAATATTGTTTCAATAAGTTTGATTTGATTCTCA
GGTGTTGCTTTTTCAAAGCATATTGTTCAGACGTATGCATTCGTGCTCAATGGAGAATTGCGGC
AGCAAGCAGAGGTATATCCATACATGGATGCTTCTTAAGAATAAATATGAATGCCTTTTGCATG
TTTGGATTAGTGGGATGGGATTTTGTTCAATGCTGCTCATCGAAACACTTCCTGAAAGGTTTCT
AACTCTTGCAAATGGCACAGATTGATGCCCACATTGGTGGGGTTAATGATATTGCCTTCTCTCA
CCCCAACAAGACCCTCTCAATTATTACTTGTGGTGATGATAAACTAATTAAGGTGAGGTCGTTG
ATATGATACACTGCTTCACCCTTTCTTGAGAAAAAGAAATGAACACCATATTCATATGATACAT
TGCTTTATCCTCTTGAAAAAATGAACCATGGATGCACATTTGATTTTGGCAGGTATGGGATGCT
CAGACAGGACAAAAGCAGTACACATTTGAAGGTCACGAAGCTCCAGTATATTCTGTTTGCCCTC
ACTACAAGGAGTCAATTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.163013132
Functional Information
Coding potential Y
Potential coding position 3667870-3667879(+)
3671034-3667879(+)
3668106-3670895(-)
Potential amino acid sequence MKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDL
KVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPP
FKVSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVGPIPKSA
AFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAFLKHPRTPTSA
PAIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNLNQGSNVMSLDFHPV
QQTILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDGS
ILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIKVWDAQ
TGQKQYTFEGHEAPVYSVCPHYKESIQVGAGVGLLLQHEAL*(+)
MLRQDKSSTHLKVTKLQYILFALTTRSQFRLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGFT
KVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENFR
QNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQSLNWQHQLCKNP
RPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVGPIPKSAAFPPMGAHAPFQPVVSPSPNAIAG
WMTNANPSLPHAAVAQGPPGLVQPPNTAAFLKHPRTPTSAPAIDYQSADSEHLMKRMRVGQPDE
VSFSGASHPANIYTQDDLPKQVVRNLNQGSNVMSLDFHPVQQTILLVGTNVGDIGIWEVGSRER
IAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDGSILGVAFSKHIVQTYAFVLNGELRQ
QAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYKE
SIQVGAGVGLLLQHEAL*(+)
MPVKGFEVLLLPDLEEYFHGVAVVLHLGEPAEVLLHLVPLPSLHQVFKVLHVEVEGRLLLQPEL
TPCSEGKQNILELRDLQMCTAFVLSEHPIP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017