Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0485000_circ_g.1 |
ID in PlantcircBase | osa_circ_007186 |
Alias | Os_ciR3608 |
Organism | Oryza sativa |
Position | chr10: 18322043-18322631 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, find_circ |
Parent gene | Os10g0485000 |
Parent gene annotation |
FF domain containing protein. (Os10t0485000-01) |
Parent gene strand | - |
Alternative splicing | Os10g0485000_circ_g.2 Os10g0485000_circ_g.3 |
Support reads | 2/3 |
Tissues | root/shoot, root, seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0485000-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_002866* osi_circ_008534 |
PMCS | 0.344958008 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18322553-18322290(+) 18322594-18322045(-) |
Potential amino acid sequence |
MYSLKATSLSSCFMALYLASLRKFSFTSYRSLTWSRNNFSASPLPKSGFTARPCGSFSSLGLDS VHDALGSFMISTSKA*(+) MKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIR RKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYEVKE NFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQ EMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRD HVKDLYEVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKERERE MRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLG KGDAEKLFRDHVKDLYEVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDE QAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDP QGRAVNPDLGKGDAEKLFRDHVKDLYE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |