Detail information of Os10g0485000_circ_g.1


General Information
CircRNA Name Os10g0485000_circ_g.1
ID in PlantcircBase osa_circ_007186
Alias Os_ciR3608
Organism Oryza sativa
Position chr10: 18322043-18322631  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, find_circ
Parent gene Os10g0485000
Parent gene annotation FF domain containing protein. (Os10t0485000-01)
Parent gene strand -
Alternative splicing Os10g0485000_circ_g.2 Os10g0485000_circ_g.3
Support reads 2/3
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0485000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCGGATTTTAGTTCTGCTATGTACTCATTAAAAGCAACCTCTCTTTCTTCGTGCTTCATGGC
TTTGTACCTTGCATCGCTCCGGAAATTTTCTTTCACctcatacaggtccttgacatggtcacga
aataacttttctgcatcacctttacctaaatcaggatttactgcacggccttgtggatcctttt
caagtctt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 414
Transcript exons: 18322043-18322165,18322257-18322403,18322488-18322631
CTCATACAGGTCCTTGACATGGTCACGAAATAACTTTTCTGCATCACCTTTACCTAAATCAGGA
TTTACTGCACGGCCTTGTGGATCCTTTTCAAGTCTTGGTTTGGATTCTGTCCATGATGCCTTGG
GATCTTTTATGATTTCAACAAGTAAAGCTTGATATGAAGACACGGCCTCTTTTCTTCGGATCTT
CAATTTTACTCTCTCCATTTCCTGTTCTTCCCTTTCTTTCCTTTTCCGCATCTCGCGCTCCCTC
TCCTTTAACTTGGCTTGTTCATCCAGTTTGGCCTTGGCAGCTTGCTCTGCTTCCTTTTCAGCGG
ATTTTAGTTCTGCTATGTACTCATTAAAAGCAACCTCTCTTTCTTCGTGCTTCATGGCTTTGTA
CCTTGCATCGCTCCGGAAATTTTCTTTCAC

Genomic sequence CTCATACAGGTCCTTGACATGGTCACGAAATAACTTTTCTGCATCACCTTTACCTAAATCAGGA
TTTACTGCACGGCCTTGTGGATCCTTTTCAAGTCTTGGTTTGGATTCTGTCCATGATGCCTATG
CAGAAAAAATAGCATAGTTAATATGAAGTTGTACAGTACATAGCAAAATAGCTTGTCAAATGGA
GTTCAACAAAGTGTCAAGTTACCTTGGGATCTTTTATGATTTCAACAAGTAAAGCTTGATATGA
AGACACGGCCTCTTTTCTTCGGATCTTCAATTTTACTCTCTCCATTTCCTGTTCTTCCCTTTCT
TTCCTTTTCCGCATCTCGCGCTCCCTCTCCTTTAACTTGGCCTGGGTTATTACATAGTATATGT
GAAGCTACAAAGCTACATTCAGTAAACAAAGCATCAGAGTACATCAGTTAAATTGACTGACTTG
TTCATCCAGTTTGGCCTTGGCAGCTTGCTCTGCTTCCTTTTCAGCGGATTTTAGTTCTGCTATG
TACTCATTAAAAGCAACCTCTCTTTCTTCGTGCTTCATGGCTTTGTACCTTGCATCGCTCCGGA
AATTTTCTTTCAC
Conservation Information
Conserved circRNAs osi_circ_002866* osi_circ_008534
PMCS 0.344958008
Functional Information
Coding potential Y
Potential coding position 18322553-18322290(+)
18322594-18322045(-)
Potential amino acid sequence MYSLKATSLSSCFMALYLASLRKFSFTSYRSLTWSRNNFSASPLPKSGFTARPCGSFSSLGLDS
VHDALGSFMISTSKA*(+)
MKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIR
RKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYEVKE
NFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQ
EMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRD
HVKDLYEVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKERERE
MRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLG
KGDAEKLFRDHVKDLYEVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDE
QAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDP
QGRAVNPDLGKGDAEKLFRDHVKDLYE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017